View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_17 (Length: 482)
Name: NF9444_low_17
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Complemental strand, 52725728 - 52725285
Alignment:
| Q |
15 |
atactaaaggcctacaaggattttcttaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaattttgtattttc |
114 |
Q |
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| T |
52725728 |
atactaaaggcttacaaggattttattaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaattttgtattttc |
52725629 |
T |
|
| Q |
115 |
aatagctaatcaaaggatgaagtaaatgaatgggggaaaagactaacttgaatgatatcatgctcggatatgtcttttgcggccattctactgtcgataa |
214 |
Q |
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| T |
52725628 |
aatagctaatctaaggatgaagtaaatgaatgggggaaaagactaacttgaatgatatcatgcttggatatgtcttttgcggccattctactgtcaataa |
52725529 |
T |
|
| Q |
215 |
ttgctggaaatgaagggaataagttgcaagta-agaattaaaggatgagaaaacagtagataaatcatgagtgagaagagtatatttaccaacaatacat |
313 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52725528 |
ttgctggaaatgaagggaataagttgcaagtagagaattaaaggatgagaaaacagtagataaatcatgagtgagaagggtatatttaccaacaatacat |
52725429 |
T |
|
| Q |
314 |
tagttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaa--tgtttaggaactaaattgatccttgattaaatgaacagtaaaaatat-a |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || | | | |||| ||| | | |||||||||||||||||||||| | |
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| T |
52725428 |
tagttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaaattgatcattgattaaa-tgaacatgaattaaatgaacagtaaaaatataa |
52725330 |
T |
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| Q |
411 |
aaaaagagtgttaaaggaaggaagaaagaaagacagacatcgaacgagtctgt |
463 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52725329 |
aaaaagagtgttaaagg--------aagaaagacagacatcgaacgagtctgt |
52725285 |
T |
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