View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_2 (Length: 651)
Name: NF9444_low_2
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Complemental strand, 1447308 - 1446691
Alignment:
| Q |
18 |
caaacacttcgagatatattgtctacttgcatgtgaaaaaattcaagatgtcacgaagatataaaaaattcaagaagatgtcacaaagatatacaaaatt |
117 |
Q |
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| T |
1447308 |
caaacacttggagatatattgtctacttgcatgtgacaaaattcaagatgtcacgaagatataaaaaattc---aagatgtcacgaagatatacaaaatt |
1447212 |
T |
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| Q |
118 |
caaatagatcaaacggttaagattnnnnnnnttaattaga-tttttggtgcaccgcatacaatgttggtctaccttaaacacatggggttgaaaggacct |
216 |
Q |
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| T |
1447211 |
caaatagatcaaacggttaagattaaaaaaattaatgagattttttggtgcaccacatataatgttggtctaccttaaacacatggggttgaaaggacct |
1447112 |
T |
|
| Q |
217 |
tcttgagtaacaaagatataatcaagtgactcaaacagagcaaaaactagttaagggaccaaagtgaaacctcagaaatagtcaatggcattgttcggaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1447111 |
tcttgagtaacaaagatataatcaagtgactcaaacagagcaaaagctagttaagggaccaaagtgaaacctcagaaatagtcaatggcattgttcggga |
1447012 |
T |
|
| Q |
317 |
accatgatataccgtgggcaaatgtgaaaatcttagaactatttttcatgtttctttaccataataaactaatacattttcacagcaaattgttacaatn |
416 |
Q |
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||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1447011 |
accatcatataccatgggcaaatgcgaaaatcttagaactatttttcatgtttctttaccataacaaactaatacattttcacagcaaattgttacaa-c |
1446913 |
T |
|
| Q |
417 |
nnnnnnnnnnnnnncaatactttcttcatacatgggtcatatgatgaatatgaaatataaatcaattcagtcttttaccttttttatcaagtcagtaggt |
516 |
Q |
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| T |
1446912 |
aacaaaaaaaaaaccaatactttcttcatacatgggtcatatgatgaatatgaaatataaatcaattcagtcttttaccttttttatcaagtcagtatgt |
1446813 |
T |
|
| Q |
517 |
taccttttttctcaagtcagtatgggaagaaaagtggaacgaaaaatggagaaagagtgtgctaagatatcaatgaagattcttagagccaagagattga |
616 |
Q |
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| T |
1446812 |
tgccttttttctcaagtcagtatgggaagaaaagtggaacgaaaaatggagaaagagtgtgctaagatatcaatgaagattcttagagccaagagattga |
1446713 |
T |
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| Q |
617 |
accagaaacttgtgacacaggt |
638 |
Q |
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| T |
1446712 |
accagaaacttgtgatacaggt |
1446691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 1450161 - 1450071
Alignment:
| Q |
160 |
tttggtgcaccgcatacaatgttggtctaccttaaacacatggggttgaaaggaccttcttgagtaacaaagatataatcaagtgactcaaacagagcaa |
259 |
Q |
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||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1450161 |
tttggtgcaccacctacaatgttggtctaccttaaacac------------gtaccttcttgagtaacaaagatataattaagtgactcaaacagagcaa |
1450074 |
T |
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