View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_21 (Length: 447)

Name: NF9444_low_21
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_21
NF9444_low_21
[»] chr5 (16 HSPs)
chr5 (142-429)||(34279321-34279608)
chr5 (17-122)||(6102870-6102975)
chr5 (18-122)||(12036275-12036379)
chr5 (68-133)||(35290668-35290733)
chr5 (36-115)||(15139155-15139234)
chr5 (64-122)||(16802069-16802127)
chr5 (66-133)||(39034466-39034533)
chr5 (36-185)||(6830247-6830396)
chr5 (47-171)||(14152468-14152592)
chr5 (54-125)||(2033493-2033564)
chr5 (47-122)||(3600152-3600227)
chr5 (47-133)||(29552357-29552442)
chr5 (74-123)||(5002928-5002977)
chr5 (65-122)||(30293837-30293894)
chr5 (71-118)||(5471124-5471171)
chr5 (69-123)||(30840616-30840670)
[»] chr6 (8 HSPs)
chr6 (17-125)||(32800244-32800352)
chr6 (54-133)||(28048744-28048823)
chr6 (64-131)||(2398041-2398108)
chr6 (18-122)||(6770876-6770980)
chr6 (64-122)||(20208026-20208084)
chr6 (64-122)||(22102049-22102107)
chr6 (64-131)||(2613365-2613432)
chr6 (69-132)||(10008225-10008288)
[»] chr2 (10 HSPs)
chr2 (19-123)||(1870462-1870566)
chr2 (21-123)||(13835877-13835979)
chr2 (17-133)||(33635544-33635659)
chr2 (64-133)||(5444505-5444574)
chr2 (64-123)||(34501607-34501666)
chr2 (47-107)||(13618228-13618288)
chr2 (64-119)||(29525652-29525707)
chr2 (66-132)||(27896495-27896561)
chr2 (66-123)||(43131774-43131831)
chr2 (47-95)||(30905411-30905459)
[»] chr8 (13 HSPs)
chr8 (19-176)||(10451886-10452044)
chr8 (47-123)||(40607339-40607415)
chr8 (64-123)||(18131232-18131291)
chr8 (46-133)||(27283322-27283408)
chr8 (64-116)||(12958923-12958975)
chr8 (47-122)||(4989737-4989812)
chr8 (64-120)||(34085219-34085275)
chr8 (64-133)||(12987654-12987723)
chr8 (65-123)||(18200695-18200753)
chr8 (76-122)||(20821932-20821978)
chr8 (64-122)||(34678220-34678278)
chr8 (65-122)||(33621408-33621465)
chr8 (46-122)||(15869006-15869082)
[»] chr7 (23 HSPs)
chr7 (19-133)||(24937862-24937976)
chr7 (47-131)||(8656328-8656412)
chr7 (54-133)||(47537456-47537535)
chr7 (47-123)||(39786448-39786524)
chr7 (64-119)||(25780245-25780300)
chr7 (54-108)||(27915197-27915251)
chr7 (64-125)||(40721425-40721487)
chr7 (55-132)||(1112156-1112233)
chr7 (64-122)||(22555747-22555805)
chr7 (20-125)||(37532523-37532628)
chr7 (64-123)||(21857613-21857672)
chr7 (65-123)||(19677036-19677094)
chr7 (63-120)||(47445368-47445425)
chr7 (46-118)||(39386951-39387023)
chr7 (76-116)||(44845854-44845894)
chr7 (65-125)||(30095357-30095419)
chr7 (17-123)||(8896564-8896670)
chr7 (75-133)||(46300704-46300762)
chr7 (38-123)||(16979983-16980068)
chr7 (62-123)||(21164672-21164733)
chr7 (75-123)||(12810171-12810219)
chr7 (19-123)||(25530513-25530617)
chr7 (75-123)||(34993152-34993200)
[»] chr1 (18 HSPs)
chr1 (47-133)||(31160757-31160843)
chr1 (19-133)||(27529-27643)
chr1 (67-133)||(28490665-28490731)
chr1 (47-117)||(39283717-39283787)
chr1 (47-120)||(11065863-11065936)
chr1 (64-133)||(48375272-48375341)
chr1 (55-133)||(41936172-41936254)
chr1 (65-111)||(35876802-35876848)
chr1 (86-123)||(27160335-27160372)
chr1 (84-133)||(27908950-27908999)
chr1 (64-133)||(34382646-34382715)
chr1 (65-120)||(46836243-46836298)
chr1 (71-133)||(45438984-45439046)
chr1 (62-120)||(35873495-35873553)
chr1 (68-109)||(13680651-13680692)
chr1 (15-60)||(32267953-32267998)
chr1 (38-123)||(33148118-33148203)
chr1 (49-117)||(47496864-47496931)
[»] scaffold0299 (1 HSPs)
scaffold0299 (18-123)||(17984-18088)
[»] chr4 (23 HSPs)
chr4 (46-122)||(4860159-4860235)
chr4 (47-133)||(28299286-28299372)
chr4 (46-123)||(45921334-45921411)
chr4 (47-126)||(2908207-2908286)
chr4 (19-122)||(53142823-53142926)
chr4 (71-133)||(32325055-32325117)
chr4 (49-133)||(55090811-55090895)
chr4 (47-133)||(16831097-16831183)
chr4 (47-133)||(37461763-37461848)
chr4 (47-132)||(51100022-51100107)
chr4 (69-133)||(19248919-19248983)
chr4 (64-123)||(9119282-9119341)
chr4 (49-120)||(14347121-14347191)
chr4 (20-123)||(34236222-34236324)
chr4 (64-133)||(5645660-5645730)
chr4 (64-120)||(50101293-50101349)
chr4 (47-120)||(40298015-40298088)
chr4 (47-120)||(21762103-21762174)
chr4 (46-120)||(22812063-22812138)
chr4 (79-122)||(32651953-32651996)
chr4 (79-122)||(32653879-32653922)
chr4 (64-115)||(37992901-37992952)
chr4 (28-104)||(48524553-48524629)
[»] chr3 (10 HSPs)
chr3 (54-123)||(41287886-41287955)
chr3 (29-133)||(34228236-34228340)
chr3 (22-131)||(48252242-48252351)
chr3 (74-125)||(45408692-45408742)
chr3 (64-123)||(2127366-2127422)
chr3 (64-115)||(19202198-19202249)
chr3 (64-123)||(23877727-23877786)
chr3 (65-123)||(4490821-4490878)
chr3 (69-123)||(29032453-29032507)
chr3 (71-123)||(25958079-25958131)
[»] scaffold0123 (1 HSPs)
scaffold0123 (64-120)||(17578-17634)
[»] scaffold0011 (1 HSPs)
scaffold0011 (46-120)||(12923-12997)
[»] scaffold0017 (1 HSPs)
scaffold0017 (84-120)||(31511-31547)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 142 - 429
Target Start/End: Original strand, 34279321 - 34279608
Alignment:
Q  142 tacttgttttatttacttaaccaatgccctgaaaatattgtttatccttctctagtttacaacgtcaaggtacatagtttcttnnnnnnnnnnnnnncgt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||              |||    
T  34279321 tacttgttttatttacttaaccaatgccctgaaaatattgtttatccttctctagtttacaacgtcaaggtacatagttgcttcaaaaaaaaaaaaacgt 34279420  T
Q  242 caaggtacatagtttacaataacaaatatagcaaactcaatcgaataataacatgggcacatattgtcatattttacaacaaatatgacaagaatcataa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34279421 caaggtacatagtttacaataacaaatatagcaaactcaatcgaataataacatgggcacataatgtcatattttacaacaaatatgacaagaatcataa 34279520  T
Q  342 ttaatgagtatctataaaccaattgacaaagaatgtgacaaaaagtatacttgaaaagaggaatcaaccaatccaataagtttagtaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34279521 ttaatgagtatctataaaccaattgacaaagaatgtgacaaaaagtatacttgaaaagaggaatcaaccaatccaataagtttagtaa 34279608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 6102975 - 6102870
Alignment:
Q  17 tagggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    |||||||||| ||||||| || || ||   |||||| ||||||  | ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6102975 tagggtcttgctaaccagtgcacttagggcaatggttaaggaatctataaatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaata 6102876  T
Q  117 attaca 122  Q
    ||||||    
T  6102875 attaca 6102870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 12036275 - 12036379
Alignment:
Q  18 agggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 117  Q
    ||||||||| |||||||  |||||||   ||| || ||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12036275 agggtcttgctaaccagtaccctcagggaaatagttaaggaacctataaatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataa 12036374  T
Q  118 ttaca 122  Q
    |||||    
T  12036375 ttaca 12036379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 35290733 - 35290668
Alignment:
Q  68 tagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  35290733 tagaaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttacaccacaatttat 35290668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 15139155 - 15139234
Alignment:
Q  36 gccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaat 115  Q
    ||||||||||||||||| ||||||| | |||||| |||||||||||| |||||||||| ||||| |||||||||||||||    
T  15139155 gccctcagaataatggttaaggaaactataaataaaaaatttgtcttgaaaatataagatttgatttttgattaagtaat 15139234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 16802127 - 16802069
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  16802127 taaatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattaca 16802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 39034466 - 39034533
Alignment:
Q  66 aatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  39034466 aatagaaaataggtcttgaaaatataagttttgacttttgattaagtaataattacactatattttat 39034533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 6830396 - 6830247
Alignment:
Q  36 gccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttatnn 135  Q
    |||||||| | |||||| |||||| || |||||||||||| |||||| |||||||||||| |||  ||||||| | |||||||||||| || ||| ||      
T  6830396 gccctcagcaaaatggttaaggaatttataaatagaaaatgtgtcttgaaaatataagttctgaaatttgattcaataataattacactacttttaataa 6830297  T
Q  136 nnnnnntacttgttttatttacttaaccaatgccctgaaaatattgttta 185  Q
          ||||||||||  || ||||||||||||| ||| |||||||||||    
T  6830296 aaaaattacttgttttggttgcttaaccaatgccttgagaatattgttta 6830247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 14152468 - 14152592
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttatnnnnnnnntactt 146  Q
    |||||| ||| ||||| |||||||||||||| |||||||| || |||||| || |||| || |||||||||||||||||| ||||||        |||||    
T  14152468 aatggttaagaaaattataaatagaaaatttatcttaaaattaaaagtttagattttttatgaagtaataattacaccactttttataaaaaagttactt 14152567  T
Q  147 gttttatttacttaaccaatgccct 171  Q
    |||||  ||||||||||||| ||||    
T  14152568 gttttggttacttaaccaataccct 14152592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 2033564 - 2033493
Alignment:
Q  54 aaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacacca 125  Q
    ||||||| | |||||| |||||||   ||||||||||||||||||||||||||||||||||||||| |||||    
T  2033564 aaggaaactataaataaaaaatttaggttaaaaatataagttttgacttttgattaagtaataattgcacca 2033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 3600227 - 3600152
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||| ||| ||| | |||||| || ||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  3600227 aatggttaagaaaactataaataaaatatttgtcttgaaaatataagttttgaattttaattaagtaataattaca 3600152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 29552442 - 29552357
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||||||| | |||||||||||||||| |   |||||||| ||||||| |||||||||||||| ||||||| | |||||||    
T  29552442 aatggttaaggaaactataaatagaaaatttgtttcgtaaatataaattttgacatttgattaagtaat-attacactatattttat 29552357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 5002977 - 5002928
Alignment:
Q  74 atttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||    
T  5002977 atttgtcttgaaaataaaagttttaacttttgattaagtaataactacac 5002928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 30293837 - 30293894
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||||| ||||||||||||||||||| | | ||||||||| ||||||| ||||||    
T  30293837 aaatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5471171 - 5471124
Alignment:
Q  71 aaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||    
T  5471171 aaaatttgtcttggaaatatatgttttgacttttgattaaataataat 5471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 30840616 - 30840670
Alignment:
Q  69 agaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||||||||||| |||||||||| | | ||||||||| ||||||| |||||||    
T  30840616 agaaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac 30840670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 32800352 - 32800244
Alignment:
Q  17 tagggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    ||||||||||||||| || |||||||  | |||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  32800352 tagggtcttgttaacaagtgccctcatgacaatggttaaggaaactataaatagaaaatttgtcttaaaaatataagttttgatttttgattaaataata 32800253  T
Q  117 attacacca 125  Q
    |||||||||    
T  32800252 attacacca 32800244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 28048744 - 28048823
Alignment:
Q  54 aaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  28048744 aaggaaattataaatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacaccactttttat 28048823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 2398108 - 2398041
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttt 131  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2398108 taaatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattacatcacttttt 2398041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 6770980 - 6770876
Alignment:
Q  18 agggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 117  Q
    ||||||||| ||||||| ||||| ||   | |||| ||||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||    
T  6770980 agggtcttgctaaccagtgcccttagggcattggttaaggaaactataaatagaaaatttatcttgaaaatataaattttgacttttgattaaataataa 6770881  T
Q  118 ttaca 122  Q
    |||||    
T  6770880 ttaca 6770876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 20208026 - 20208084
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  20208026 taaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattaca 20208084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 22102049 - 22102107
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  22102049 taaatataaaatttgttttgaaaatataagtattgacttttgattaagtaataattaca 22102107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 2613365 - 2613432
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttt 131  Q
    |||||||||| |||||||||||||||||||||   ||||||||| ||||||||||| || ||||||||    
T  2613365 taaatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatttcatcacatttt 2613432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 10008288 - 10008225
Alignment:
Q  69 agaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttta 132  Q
    ||||| ||||||||||||||||||    | ||||||||| |||||||||||||||||| |||||    
T  10008288 agaaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccacttttta 10008225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 1870462 - 1870566
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    |||||||| ||||||| ||||||||   |||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  1870462 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataat 1870561  T
Q  119 tacac 123  Q
    |||||    
T  1870562 tacac 1870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 13835979 - 13835877
Alignment:
Q  21 gtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    ||||||||||||  ||||||||   ||||||| ||| ||| | |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  13835979 gtcttgttaacccacgccctcaaggtaatggttaagaaaactataaatagaaaatctgtcttgaaaatataagttttgactttttattaagtaataatta 13835880  T
Q  121 cac 123  Q
    |||    
T  13835879 cac 13835877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 33635659 - 33635544
Alignment:
Q  17 tagggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    |||||||||| ||||| | |||||||||  |||| | | |||| || |||||  |||||||||||| ||||||||| |||||||||||||||||||||||    
T  33635659 tagggtcttgctaaccggtgccctcagagcaatgttta-ggaatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaata 33635561  T
Q  117 attacaccacattttat 133  Q
    |||||| ||| ||||||    
T  33635560 attacatcactttttat 33635544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 5444505 - 5444574
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||| |||||||| ||||||||||||||||||||| |||||||||||| ||||| || ||||||    
T  5444505 taaataaaaattttgtcttgaaaatataagttttgacttttaattaagtaataaatacacaactttttat 5444574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 34501607 - 34501666
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||| |||| ||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  34501607 taaataaaaaagttgtcttaaaaatataatttttgattttttattaagtaataattacac 34501666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 13618288 - 13618228
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgat 107  Q
    |||||| ||| ||||| |||||| |||| |||||||||||||||||||||||||| |||||    
T  13618288 aatggttaagaaaattataaatataaaaattgtcttaaaaatataagttttgactcttgat 13618228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 29525707 - 29525652
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 119  Q
    |||||| ||| ||| ||| |||||||||| ||||||||||||||||||||||||||    
T  29525707 taaataaaaattttatctcaaaaatataaattttgacttttgattaagtaataatt 29525652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 27896561 - 27896495
Alignment:
Q  66 aatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttta 132  Q
    |||||||||||||| ||| ||||||||| | | |||||||||| |||||||||||||| || |||||    
T  27896561 aatagaaaatttgttttagaaatataagctgttacttttgatttagtaataattacacaacttttta 27896495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 43131774 - 43131831
Alignment:
Q  66 aatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||| ||| |||||||||||||| |||||||  ||||||||| |||||||||||||||    
T  43131774 aataaaaattttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 43131831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 30905459 - 30905411
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagtt 95  Q
    |||||| ||||||||| ||||||| || |||||||||||||||||||||    
T  30905459 aatggttaaggaaattataaatagcaactttgtcttaaaaatataagtt 30905411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 10452044 - 10451886
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa- 117  Q
    |||||||| ||||||| || ||||| || || || ||||||| | |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||     
T  10452044 gggtcttgctaaccagtgctctcaggatcatagttaaggaaactataaataaaaattttgtattaaaaatataagttttgacttttgattaagtaataat 10451945  T
Q  118 ttacaccacattttatnnnnnnnntacttgttttatttacttaaccaatgccctgaaaa 176  Q
    ||||||||  ||||||        ||||||||||| || ||||||||||||||||||||    
T  10451944 ttacaccattttttataaaaaaattacttgttttagttgcttaaccaatgccctgaaaa 10451886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 40607415 - 40607339
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||| ||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40607415 aatggttaagaaatttataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacac 40607339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 18131291 - 18131232
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  18131291 taaatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacac 18131232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 27283408 - 27283322
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||| ||||||| | |||||||||||||| | ||| || ||||||||||||||||||||||| |||||||||||  |||||||||    
T  27283408 taatggttaaggaaactataaatagaaaatttattttataa-tataagttttgacttttgattaaataataattacagaacattttat 27283322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 12958975 - 12958923
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  12958975 taaatagaaaatttgtcttcaaaatataagtttttatttttgattaagtaata 12958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 4989812 - 4989737
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||| ||| ||| | |||||| |||||||||||| |||||||||||||||| ||||||| |||||| |||||||    
T  4989812 aatggttaagaaaactataaataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattaca 4989737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 34085219 - 34085275
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||| ||||||||    
T  34085219 taaataaaaaatttgttttgaaaatataagttttgacttttaattaagcaataatta 34085275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 12987654 - 12987723
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||| |||| |||||||| |||| ||||||||| |||||||||||| |||| |||||||| | ||||||    
T  12987654 taaatggaaattttgtcttgaaaacataagtttttacttttgattaaataatgattacaccgctttttat 12987723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 18200695 - 18200753
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||| ||| ||||||||||||||||||  | | ||||||||||||||||| |||||||    
T  18200695 aaataaaaattttgtcttaaaaatataacatgttacttttgattaagtaatgattacac 18200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 20821978 - 20821932
Alignment:
Q  76 ttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||||||||||||| || | |||||| |||||||||||||||||    
T  20821978 ttgtcttaaaaatataaattgtcactttttattaagtaataattaca 20821932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 34678220 - 34678278
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||||||||||||||| ||||| |||  | | ||||||||| ||||||||||||||    
T  34678220 taaatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattaca 34678278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 33621465 - 33621408
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||| ||| ||||||||||||||||||  ||| ||||||||| ||||||| ||||||    
T  33621465 aaataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca 33621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 15869006 - 15869082
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||| ||| ||| | |||||| |||||||  || |||||||||| |||||| |||| ||||| |||||||||||    
T  15869006 taatggttaagaaaactataaataaaaaatttaactaaaaaatataaattttgatttttaattaaataataattaca 15869082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 24937976 - 24937862
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    |||||||| ||||||| ||||||||   |||||| ||||||| | |||||||||||||||| |||||||||||  ||||||||||| |||||||||||||    
T  24937976 gggtcttgctaaccagtgccctcagggcaatggttaaggaaactataaatagaaaatttgttttaaaaatatagattttgacttttaattaagtaataat 24937877  T
Q  119 tacaccacattttat 133  Q
    |||||||| ||||||    
T  24937876 tacaccactttttat 24937862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 8656412 - 8656328
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttt 131  Q
    |||||| ||||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||    
T  8656412 aatggttaaggaaactataaatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataattataccacttttt 8656328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 47537535 - 47537456
Alignment:
Q  54 aaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||| | |||||  |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  47537535 aaggaaactataaatgaaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacacaactttttat 47537456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 39786448 - 39786524
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||| ||||||  | ||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  39786448 aatggttaaggaatctataaatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacac 39786524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 25780300 - 25780245
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 119  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  25780300 taaataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 27915197 - 27915251
Alignment:
Q  54 aaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgatt 108  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  27915197 aaggaaattatatatagaaaatttgtgttaaaaatataagttttgacttttgatt 27915251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 40721487 - 40721425
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgac-ttttgattaagtaataattacacca 125  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||| |||||||||||    
T  40721487 taaatagaaaatttgtcataaaaatataagttttaactttttgattaagtagtaattacacca 40721425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 1112156 - 1112233
Alignment:
Q  55 aggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttta 132  Q
    |||||| | |||||||||||||||| || ||| ||||| ||||||||||| || ||||||||||||||| ||||||||    
T  1112156 aggaaactataaatagaaaatttgttttgaaattataaattttgacttttaatgaagtaataattacacaacatttta 1112233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 22555805 - 22555747
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||||    
T  22555805 taaatagaaattttatctttaaaatataagttttgatttttgatcaagtaataattaca 22555747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 37532523 - 37532628
Alignment:
Q  20 ggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 119  Q
    ||||||| ||||||| || |||||   | |||| ||||||| | ||| || ||||||| | |||||||||||| ||| |||||||||||||| |||||||    
T  37532523 ggtcttgctaaccagtgctctcagggaagtggttaaggaaactataagtataaaatttatattaaaaatataaatttcgacttttgattaagaaataatt 37532622  T
Q  120 acacca 125  Q
    ||||||    
T  37532623 acacca 37532628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 21857613 - 21857672
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||||||||||||||||  |||||||||||||||  |||| |||| ||||||||||||    
T  21857613 taaatagaaaatttgtcttgtaaatataagttttgatatttggttaattaataattacac 21857672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 19677094 - 19677036
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||| |||||||| |||||||||| | | ||||||||||||||||| |||||||    
T  19677094 aaatagaaattttgtcttgaaaatataagatgttacttttgattaagtaatgattacac 19677036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 47445368 - 47445425
Alignment:
Q  63 ttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    ||||||||||| ||||  || |||||||||||||| ||||||||| ||||||||||||    
T  47445368 ttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataatta 47445425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 39387023 - 39386951
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    ||||||| || |||| | |||||| ||||||| || ||||||||||| |||| ||||||||| ||||||||||    
T  39387023 taatggttaaagaaactataaataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataat 39386951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 44845894 - 44845854
Alignment:
Q  76 ttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  44845894 ttgtcttaaaaatataaattttgacttttgattaggtaata 44845854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 30095419 - 30095357
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatata--agttttgacttttgattaagtaataattacacca 125  Q
    |||||||||||| ||||| ||||||||  |||||| |||||||||| ||||||| ||||||||    
T  30095419 aaatagaaaattagtcttgaaaatatataagttttaacttttgatttagtaatagttacacca 30095357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 8896564 - 8896670
Alignment:
Q  17 tagggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaata 116  Q
    |||||| ||||||||||| ||||||| || |||| | || |||  |  ||||| ||| ||||||||||||||||||| | | ||||||||| | |||||     
T  8896564 tagggttttgttaaccagtgccctcacaacaatgtttaaagaatctacaaatataaattttgtcttaaaaatataagatgttacttttgatcaggtaatg 8896663  T
Q  117 attacac 123  Q
    |||||||    
T  8896664 attacac 8896670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 46300762 - 46300704
Alignment:
Q  75 tttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||||| |||||||| |||||||||||| || | |||||||||||| ||| ||||||    
T  46300762 tttgtcttgaaaatatatgttttgactttttatcatgtaataattacatcactttttat 46300704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 16980068 - 16979983
Alignment:
Q  38 cctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||| || ||| ||  || |||||| |||||||| |||||||||| | | |||||||||  ||||||||| ||||    
T  16980068 cctcagaataatggttaaagaatttacaattagaaattttgtcttgaaaatataagatgttacttttgatcgagtaataatcacac 16979983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 21164733 - 21164672
Alignment:
Q  62 tttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||||||||| |||| ||| |||||  ||||||| | ||||||| |||||||||||||||    
T  21164733 tttaaatagaaattttgacttgaaaatgcaagtttttatttttgatgaagtaataattacac 21164672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 12810171 - 12810219
Alignment:
Q  75 tttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||||| | | ||||||||  |||||||||||||||    
T  12810171 tttgtcttaaaaatataagatattacttttgacaaagtaataattacac 12810219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 25530513 - 25530617
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    |||||||| ||||||||  |||||   ||||||| || ||| ||||||||||||| ||| ||||| ||||||||  | | || |||||| ||||||| ||    
T  25530513 gggtcttgctaaccagcatcctcatggtaatggttaaagaatttttaaatagaaattttatcttagaaatataaaatgttacatttgataaagtaatgat 25530612  T
Q  119 tacac 123  Q
    |||||    
T  25530613 tacac 25530617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 34993152 - 34993200
Alignment:
Q  75 tttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||||| | | ||||||||| || ||||||||||||    
T  34993152 tttgtcttaaaaatataagatgttacttttgataaaataataattacac 34993200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 31160843 - 31160757
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  31160843 aatggttaaggaaaatataaatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattacatcactttttat 31160757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 27643 - 27529
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    |||||||| ||||||| |||||||  | |||| | |||| || | |||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  27643 gggtcttgctaaccagtgccctcacgacaatgattaagggaactataaataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataat 27544  T
Q  119 tacaccacattttat 133  Q
    ||||| || ||||||    
T  27543 tacactactttttat 27529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 28490665 - 28490731
Alignment:
Q  67 atagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||    
T  28490665 atagaaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacacaactttttat 28490731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 39283787 - 39283717
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 117  Q
    |||||| || |||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  39283787 aatggttaatgaaactataaatagaaaatttatcttaaaaatataagttttgatttttgattaagtaataa 39283717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 11065863 - 11065936
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11065863 aatggttaaggaaactataattataaaatttctcttgaaaatataagttttgacttttgattaagtaataatta 11065936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 48375341 - 48375272
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| |||| ||||||  ||||||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  48375341 taaatataaaaattgtctagaaaatataagttttgacatttgattaagtgataattacaccactttttat 48375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 41936254 - 41936172
Alignment:
Q  55 aggaaattttaaatagaaaatttgtcttaaaaatataa---gttttgacttttgatt-aagtaataattacaccacattttat 133  Q
    |||||| | |||||| |||||||||||| |||||||||   |||||||||||||||| ||||||||||||||| |||||||||    
T  41936254 aggaaactataaataaaaaatttgtcttgaaaatataagttgttttgacttttgattaaagtaataattacactacattttat 41936172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 35876848 - 35876802
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaag 111  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35876848 aaataaaaaatttgtcttaaaaatataagttttaacttttgattaag 35876802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 27160335 - 27160372
Alignment:
Q  86 aatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27160335 aatataagttttgacttttgattaagtaataattacac 27160372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 27908999 - 27908950
Alignment:
Q  84 aaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27908999 aaaatataaattttgacttttgattaagtaataattacacaactttttat 27908950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 34382646 - 34382715
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||||||| ||||||||||||||||||| | ||||||||||  ||||||||||| || ||||||    
T  34382646 taaataaaaaatttatcttaaaaatataagttttaatttttgattaaacaataattacacaactttttat 34382715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 46836298 - 46836243
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    ||||| ||| |||||||| |||||||| |||||||||| |||||||||||||||||    
T  46836298 aaataaaaattttgtcttgaaaatataggttttgacttatgattaagtaataatta 46836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 45438984 - 45439046
Alignment:
Q  71 aaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||| ||||||||||||||||||| |||||| ||||||| |||||| || ||| ||||||    
T  45438984 aaaatttatcttaaaaatataagttttaacttttaattaagtcataattgcatcactttttat 45439046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 35873553 - 35873495
Alignment:
Q  62 tttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||||| |||||||||||| ||||| ||| |||| |||||| || ||||||||||||    
T  35873553 tttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 13680651 - 13680692
Alignment:
Q  68 tagaaaatttgtcttaaaaatataagttttgacttttgatta 109  Q
    |||||| ||| |||| ||||||||||||||||||||||||||    
T  13680651 tagaaattttatcttgaaaatataagttttgacttttgatta 13680692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 32267953 - 32267998
Alignment:
Q  15 tgtagggtcttgttaaccagcgccctcagaataatggtcaaggaaa 60  Q
    |||||||||||| ||||||| |||||||| |||||||| |||||||    
T  32267953 tgtagggtcttgctaaccagtgccctcaggataatggttaaggaaa 32267998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 33148118 - 33148203
Alignment:
Q  38 cctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||||| |||||| ||||||  |  |||| |||| ||||||||||||||||||| |   ||||||||| ||||||| |||||||    
T  33148118 cctcagaacaatggttaaggaatatacaaattgaaattttgtcttaaaaatataagatgctacttttgatcaagtaatgattacac 33148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 47496931 - 47496864
Alignment:
Q  49 tggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 117  Q
    |||| |||||| || |||||||||| ||| ||||||||||||||||| | | ||||||| |||||||||    
T  47496931 tggttaaggaatttataaatagaaattttatcttaaaaatataagttgtta-ttttgatgaagtaataa 47496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 17984 - 18088
Alignment:
Q  18 agggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataa 117  Q
    ||||||||||||  ||| |||||||||  | |||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17984 agggtcttgttattcagtgccctcagac-attggttaaggaaactataaatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataa 18082  T
Q  118 ttacac 123  Q
    ||||||    
T  18083 ttacac 18088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 4860235 - 4860159
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    ||||||| |||||||||  ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  4860235 taatggttaaggaaattacaaatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattaca 4860159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 28299286 - 28299372
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||||||||| |||||||||||||| | || ||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  28299286 aatggttaaggaaattataaatagaaaatttatattgaaaatataagttttgtcttttgattaaataataattacatcacattttat 28299372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 45921334 - 45921411
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||| ||||||  | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  45921334 taatggttaaggaatctataaatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacac 45921411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 2908207 - 2908286
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccac 126  Q
    |||||| ||||||| | ||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||    
T  2908207 aatggttaaggaaactataaatagaaaatttgtcttgaaaatataaattttgatttttgagtaagtaataattacaccac 2908286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 53142926 - 53142823
Alignment:
Q  19 gggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataat 118  Q
    |||||||| ||||||| | |||| ||| |||||| ||||||  | |||||| |||||||||| | |||||||||||||| ||||||||||||||||||||    
T  53142926 gggtcttgctaaccagtgtcctcggaacaatggttaaggaagctataaataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataat 53142827  T
Q  119 taca 122  Q
    ||||    
T  53142826 taca 53142823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 32325117 - 32325055
Alignment:
Q  71 aaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  32325117 aaaatttgtcttgaaaatataatttttgacttttgattaagtaataattacaccactttttat 32325055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 55090895 - 55090811
Alignment:
Q  49 tggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||| ||||||| | |||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  55090895 tggttaaggaaactataaatgaaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacacaactttttat 55090811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 16831097 - 16831183
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| ||| ||| | |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| || || ||||||    
T  16831097 aatggttaagaaaactataaatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatactactttttat 16831183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 37461763 - 37461848
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    |||||| || |||||| ||||||||||||| || |||||||||||| |||||| |||| ||||||||||||||||||||| ||||||    
T  37461763 aatggttaaagaaattataaatagaaaatt-gttttaaaaatataaattttgatttttaattaagtaataattacaccactttttat 37461848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 51100022 - 51100107
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacatttta 132  Q
    |||||| ||||||  | |||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||| || |||||    
T  51100022 aatggttaaggaatctataaatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactacttttta 51100107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 19248983 - 19248919
Alignment:
Q  69 agaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||||||    
T  19248983 agaaaatttgtcttaaaaatataagttttgatttttaattaagtaatgattacatcactttttat 19248919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 9119341 - 9119282
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||    
T  9119341 taaatagaaaatttgtggtgaaaatataagttttgacttttgattaagtaacaattacac 9119282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 14347121 - 14347191
Alignment:
Q  49 tggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||| ||||||| | |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  14347121 tggttaaggaaactataaata-aaaatttatcttaaaaatataagttttgatttttgattaagtaataatta 14347191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34236324 - 34236222
Alignment:
Q  20 ggtcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatt 119  Q
    ||||||| ||||||| ||||||| || |||||| || |||| | |||||| |||||||||| | |||||||||| ||| |||||||||||||| ||||||    
T  34236324 ggtcttgctaaccagtgccctcataacaatggttaaagaaactataaataaaaaatttgtcctgaaaatataag-tttaacttttgattaagtgataatt 34236226  T
Q  120 acac 123  Q
    ||||    
T  34236225 acac 34236222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 5645660 - 5645730
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatat-aagttttgacttttgattaagtaataattacaccacattttat 133  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||| |||||||||||| || ||||||    
T  5645660 taaatagaaaatttgtcttgaaaaaattaagttttgacttttgattaaataataattacactactttttat 5645730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 50101293 - 50101349
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  50101293 taaataaaaaatttgtcttaaaaatataagttttgatttttgattaaatattaatta 50101349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 40298088 - 40298015
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||| || |||| | |||||||||||||| | || |||||||||||||||| |||||||||||| |||||||    
T  40298088 aatggttaatgaaactataaatagaaaatttattttgaaaatataagttttgatttttgattaagtgataatta 40298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 21762174 - 21762103
Alignment:
Q  47 aatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||| || |||||| |||||| |||||||||||||||  ||||| |||| |||||||||||| |||||||||    
T  21762174 aatggttaaagaaattataaataaaaaatttgtcttaaa--tataaattttaacttttgattaaataataatta 21762103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 22812063 - 22812138
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgatt-aagtaataatta 120  Q
    ||||||| || |||| | ||||||||| |||| | |||||||||||||||||||| ||| ||| ||||||||||||    
T  22812063 taatggttaaagaaactgtaaatagaatatttattttaaaaatataagttttgacgtttcattcaagtaataatta 22812138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 32651953 - 32651996
Alignment:
Q  79 tcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||||||||||| |||| |||||||| |||||||||||||||    
T  32651953 tcttaaaaatataaattttaacttttgaataagtaataattaca 32651996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 32653879 - 32653922
Alignment:
Q  79 tcttaaaaatataagttttgacttttgattaagtaataattaca 122  Q
    |||||||||||||| |||| |||||||| |||||||||||||||    
T  32653879 tcttaaaaatataaattttaacttttgaataagtaataattaca 32653922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 37992952 - 37992901
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaat 115  Q
    ||||||||| |||||| || ||||||||| |||||| |||||||||||||||    
T  37992952 taaatagaagatttgttttgaaaatataaattttgatttttgattaagtaat 37992901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 48524629 - 48524553
Alignment:
Q  28 taaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgactttt 104  Q
    ||||||| |||||||||| |||| | ||| ||| | |||||| ||||||||| |  |||||||||||||||| ||||    
T  48524629 taaccagtgccctcagaacaatgattaagcaaactataaataaaaaatttgtatagaaaatataagttttgattttt 48524553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 41287886 - 41287955
Alignment:
Q  54 aaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  41287886 aaggaaactataaatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattacac 41287955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 34228236 - 34228340
Alignment:
Q  29 aaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacaccacat 128  Q
    |||||| | |||||| | |||||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || ||| |    
T  34228236 aaccagtgtcctcaggacaatggttaaggaaactataaataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatttcatcactt 34228335  T
Q  129 tttat 133  Q
    |||||    
T  34228336 tttat 34228340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 48252242 - 48252351
Alignment:
Q  22 tcttgttaaccagcgccctcagaataatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattac 121  Q
    ||||||||||||  || || || | |||||| ||||||  | |||||| ||||||| |||| ||||||||||||||||||||||| ||| ||||||| ||    
T  48252242 tcttgttaaccaatgcgcttaggaaaatggttaaggaatctataaataaaaaatttatcttgaaaatataagttttgacttttgagtaaataataatgac 48252341  T
Q  122 accacatttt 131  Q
    | ||| ||||    
T  48252342 atcacttttt 48252351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 45408692 - 45408742
Alignment:
Q  74 atttgtcttaaaaatataagttttgacttttgattaagtaataattacacca 125  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  45408692 atttgtcttaaaaatataacttttgac-tttgattaagtaatatttacacca 45408742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 2127366 - 2127422
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||| |||||||||||||| |||||   |||||| |||||||||||||||||||||||    
T  2127366 taaataaaaaatttgtcttaagaatat---ttttgatttttgattaagtaataattacac 2127422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 19202198 - 19202249
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaat 115  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||| ||||    
T  19202198 taaatagataatttttcttgaaaatataagttttggcttttgattaaataat 19202249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 23877786 - 23877727
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    |||||| |||||||  ||| || |||||||||||||||||| |||||| |||||||||||    
T  23877786 taaataaaaaatttaccttgaatatataagttttgacttttaattaagcaataattacac 23877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 4490878 - 4490821
Alignment:
Q  65 aaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||| ||||||| |||||||||| |||| ||||||||| || ||||||||||||    
T  4490878 aaatagaaattttgtct-aaaaatataaatttttacttttgataaaataataattacac 4490821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 29032507 - 29032453
Alignment:
Q  69 agaaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||| ||||||||||||||||||| | | ||||||||| ||||||| |||||||    
T  29032507 agaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattacac 29032453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 25958079 - 25958131
Alignment:
Q  71 aaaatttgtcttaaaaatataagttttgacttttgattaagtaataattacac 123  Q
    ||||||||||||||||||||||| | | ||||||||| ||||||  |||||||    
T  25958079 aaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacac 25958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 17634 - 17578
Alignment:
Q  64 taaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    |||||||||||||||  || ||||||||||||| || |||||||||| |||||||||    
T  17634 taaatagaaaatttgagttgaaaatataagtttcgaattttgattaattaataatta 17578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 12997 - 12923
Alignment:
Q  46 taatggtcaaggaaattttaaatagaaaatttgtcttaaaaatataagttttgacttttgattaagtaataatta 120  Q
    ||||||| || |||| | ||||||||||| || | |||||||||||| |||  |||||||||| |||||||||||    
T  12997 taatggttaaagaaactataaatagaaaaattattttaaaaatataaatttaaacttttgatttagtaataatta 12923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 31547 - 31511
Alignment:
Q  84 aaaatataagttttgacttttgattaagtaataatta 120  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  31547 aaaatataagttttgccttttgattaactaataatta 31511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University