View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_22 (Length: 442)
Name: NF9444_low_22
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 9175554 - 9175969
Alignment:
| Q |
11 |
tggacatcatacatgcattcaatctgaagtgttggtgctacacaagtatttagaagatttgtcccgtccttaagaactagttatctgatttaaatgatag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9175554 |
tggacatcatacatgcattcaatctgaagtgttggtgctacacaagtatttagaagatttgtcccgtccttaagaactggttatctgatttaaatgatag |
9175653 |
T |
|
| Q |
111 |
gctaagaaattgaggtacttactcgagattctctctttaaacagggacgtcttaaaagttgttaaaaaccatagtcattaaaaacctatcagttgaagaa |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9175654 |
gctaagaaattgagatacttactcgagattctctctttaaacagggacgtcttaaaagttgttaaaaaccatagtcattaaaaacctatcagttgaagaa |
9175753 |
T |
|
| Q |
211 |
aaactttccaattgttatttaggaatcattagactttgccaatcacttgcttctttgttgaactgttacgaatctagtcactagtcccatgcttggatta |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9175754 |
aaactttccgattgttatttaggaatcattagactttgccaatcacttgcttctttgttgaactgttacgaatctagtcactagtcccatgcttggatca |
9175853 |
T |
|
| Q |
311 |
aaaaattaatagtttcattaaaatattgatctttaatagaccgtgatgcatcgattagccagcatcagtccttacctagcagaagtgacaaggcttgatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9175854 |
aaaaattaatagtttcattaaaatattgatctttaatagaccgtgatgcatcgattagccagcatcagtccttacctagcagaagtgacaaggcttgatt |
9175953 |
T |
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| Q |
411 |
gaatttgttttattta |
426 |
Q |
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| T |
9175954 |
gaatttgttttattta |
9175969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 8650512 - 8650118
Alignment:
| Q |
11 |
tggacatcatacatgcattcaatctgaagtgttggtgctacacaagtatttagaagatttgtcccgtccttaagaactagttatctgatttaaatgatag |
110 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||| ||||| |||||||||||| | |
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| T |
8650512 |
tggacatcagacatgtattcaatctgaagtgttggtgcgacacaagtatttagaagattcgtttcttccttaagaaccagttaggtgatttaaatgaatg |
8650413 |
T |
|
| Q |
111 |
gctaagaaattgaggtacttactcgagattctctctttaaacagggacgtcttaaaagttgttaaaaaccatagtcattaaaaacctatca---gttgaa |
207 |
Q |
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|||||||||||||| ||||||| ||||||| | | |||| |||||| ||||| || ||||||||||||||||||| |||| | |
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| T |
8650412 |
gctaagaaattgagatacttacacgagatttgcccattaaccagggaagtctt--------------tcctaagtcattaaaaacctatcagttgttgta |
8650327 |
T |
|
| Q |
208 |
gaaaaactttccaattgttatttaggaatcattagactttgccaatcacttgcttctttgttgaactgttacgaatctagtcactagtcccatgcttgga |
307 |
Q |
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| T |
8650326 |
gaaaaacttt-ctactgttatttaggaatcattagacttttccaatcacttgcttctttgttgaactattacatat-------ctagtcccatgcttgga |
8650235 |
T |
|
| Q |
308 |
ttaaaaaattaatagtttcattaaaatattgatctttaatagaccgtgatgcatcgattagccagcatcagtccttacct---agcagaagtgacaaggc |
404 |
Q |
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| |||| ||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||| | |||||||| |||| | |||||||||||||| |
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| T |
8650234 |
taaaaatattaa-agtttcattaaaatattgatttttgatagaccgtgatgcattgattagccaacctcagtcctcaccttacatgagaagtgacaaggc |
8650136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 21038195 - 21038235
Alignment:
| Q |
12 |
ggacatcatacatgcattcaatctgaagtgttggtgctaca |
52 |
Q |
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||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
21038195 |
ggacatcatacatgccttcaatttgaagtggtggtgctaca |
21038235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 2642883 - 2642839
Alignment:
| Q |
13 |
gacatcatacatgcattcaatctgaagtgttggtgctacacaagt |
57 |
Q |
| |
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||||||| ||||||||||||| ||||||| |||||||||| |||| |
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| T |
2642883 |
gacatcaaacatgcattcaatatgaagtgctggtgctacataagt |
2642839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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