View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_25 (Length: 437)
Name: NF9444_low_25
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 1094713 - 1095123
Alignment:
| Q |
1 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
100 |
Q |
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| T |
1094713 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
1094812 |
T |
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| Q |
101 |
accattgctcattggatcagtagtatcatgattcatgagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaa |
200 |
Q |
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| T |
1094813 |
accattgctcattggatcagtagtatcat-------gagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaa |
1094905 |
T |
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| Q |
201 |
aggtaaatattgcttttgttggagaagtggtgttggagaatgagcgatgtgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaaatg |
300 |
Q |
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| T |
1094906 |
aggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttaacaagtaaatatggggtg-gatg |
1095004 |
T |
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| Q |
301 |
gggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagtaaagatggtggtggtaatgttcctggtatttggttttctaatcg |
400 |
Q |
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| T |
1095005 |
gggttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtgg---tgttcctggtagttggttttctaaccg |
1095101 |
T |
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| Q |
401 |
cttgtcaaaagtggttggaaat |
422 |
Q |
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| T |
1095102 |
catgccaaaagtagttggaaat |
1095123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 157 - 422
Target Start/End: Original strand, 1116295 - 1116560
Alignment:
| Q |
157 |
aatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtggtgttggagaatgagcgatgtgaatag |
256 |
Q |
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| T |
1116295 |
aattttggttttagttgatgcttgccttcttaattgggtcccaaaggtgaatattgattttgttggagaagtggtgttggtgaatgagcgatgtgaatag |
1116394 |
T |
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| Q |
257 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
356 |
Q |
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| T |
1116395 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
1116494 |
T |
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| Q |
357 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaat |
422 |
Q |
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| T |
1116495 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaat |
1116560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 150 - 395
Target Start/End: Original strand, 1097869 - 1098111
Alignment:
| Q |
150 |
agtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtggtgttggagaatgagcgatg |
249 |
Q |
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| T |
1097869 |
agtagacaattttggcttaaatttatacttgcttgcttaattgggttccaaaggtaaatattgctttt-ttggagaagtggtgttggaggat-----ata |
1097962 |
T |
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| Q |
250 |
tgaatagagttaatggtttaaattttaatcaagtaaatatggagtgaa--atggggtttttcacaaggtgtaatctagattcatcttggtgggaaaa-ct |
346 |
Q |
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| T |
1097963 |
tgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggtgtaatctagatttatcttggtgggaaaaact |
1098062 |
T |
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| Q |
347 |
aacgttgagtaaagatggtggtggtaatgttcctggtatttggttttct |
395 |
Q |
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| T |
1098063 |
aatgttgagtaaagatggtggtggtaatgtttttggtatttggctttct |
1098111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1090979 - 1091076
Alignment:
| Q |
1 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
100 |
Q |
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| T |
1090979 |
ggattgaatgtttggtttttcttcttctttctgtaacgttctggcaatggagatttaaggagaca---aatagtggtacttgattgtcattatactcaca |
1091075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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