View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_27 (Length: 408)

Name: NF9444_low_27
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_27
NF9444_low_27
[»] chr2 (1 HSPs)
chr2 (78-398)||(18031190-18031506)
[»] chr4 (1 HSPs)
chr4 (90-253)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (78-252)||(29642020-29642198)
chr3 (122-172)||(4803977-4804027)
chr3 (122-169)||(10535703-10535750)
chr3 (255-289)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (84-153)||(22002453-22002522)
chr7 (273-398)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (82-178)||(32309433-32309529)
chr8 (258-395)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (82-178)||(33364663-33364759)
chr6 (258-395)||(33364360-33364496)
chr6 (255-290)||(22208490-22208525)
chr6 (255-297)||(16592721-16592763)
chr6 (257-307)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (82-178)||(30330131-30330227)
chr1 (258-395)||(30330394-30330530)
chr1 (122-169)||(25626139-25626186)
chr1 (255-289)||(9934245-9934279)
chr1 (257-307)||(24208117-24208167)
chr1 (257-307)||(45027897-45027947)
chr1 (257-307)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (122-169)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 78 - 398
Target Start/End: Original strand, 18031190 - 18031506
Alignment:
Q  78 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  18031190 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaa 18031289  T
Q  178 aacaatatgacaata-ttcttttcataatgtaaacataatggaatgagctttcagttttcttgtacccacacctcacatcattttggcatcatgctcttc 276  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  18031290 aagaatatgacaatacttcttttcataatgtaaatataatggaatgagcttccaattttcttgtccccacacctcacatctttttgacatcatgctcttc 18031389  T
Q  277 atatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattctcaac 376  Q
    ||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  18031390 atatgactacttatttgttaattattcttcc-----aacaattagctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaac 18031484  T
Q  377 ttaaagtctttgggtgtctctg 398  Q
    ||||||||||  ||||||||||    
T  18031485 ttaaagtcttctggtgtctctg 18031506  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 55156474 - 55156642
Alignment:
Q  90 caagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgaca 189  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  55156474 caagtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgaca 55156573  T
Q  190 ata-ttcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctcac 253  Q
    ||| ||||||  ||||    |||||||| ||||||||||||||   |||||||||| | ||||||||||    
T  55156574 atacttctttctataatttctgtaaacaaaatggaatgagcttctggttttcttgtcctcacacctcac 55156642  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 78 - 252
Target Start/End: Original strand, 29642020 - 29642198
Alignment:
Q  78 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 177  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||    
T  29642020 gcacacaaatctcaagctttttccacttttctttattttcgcaatcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaa 29642119  T
Q  178 aacaatatgacaa-tattcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctca 252  Q
    || |||||||||| | |||||| |||||    |||||||| ||||||| |||||| |||||||||||| | |||||||||    
T  29642120 aataatatgacaattcttctttccataatctttgtaaacaaaatggaa-gagcttccagttttcttgtcctcacacctca 29642198  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  122 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 172  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  122 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 169  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 48101561 - 48101527
Alignment:
Q  255 tcattttggcatcatgctcttcatatggctactta 289  Q
    ||||||||||||||||||||||| |||||||||||    
T  48101561 tcattttggcatcatgctcttcaaatggctactta 48101527  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 22002522 - 22002453
Alignment:
Q  84 aaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataa 153  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  22002522 aaatctcaagcttattccacttttattcattttcctaatcaaattaaaacaaaatttgaaagagatataa 22002453  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 22002269 - 22002144
Alignment:
Q  273 cttcatatggctacttatttgttaattattcttccaaccaa-acaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattc 371  Q
    ||||||||| | ||||||||||||| ||||||||||||||| | || |||||||| |||| |||| ||| |||  ||| | ||| || | ||||| ||||    
T  22002269 cttcatatgaccacttatttgttaaatattcttccaaccaacataagtagctcttaaaaccccaactacgattccttatcaaaatat-ttcctcctattc 22002171  T
Q  372 tcaacttaaagtctttgggtgtctctg 398  Q
    ||| ||||||||| | |||||||||||    
T  22002170 tcatcttaaagtcatcgggtgtctctg 22002144  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 32309529 - 32309433
Alignment:
Q  82 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 178  Q
    ||||||| |||||| | |||| |||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309529 ataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 32309266 - 32309130
Alignment:
Q  258 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 357  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  32309266 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 32309168  T
Q  358 tgtccctccaattctcaacttaaagtctttgggtgtct 395  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  32309167 tctccatcctactctcatcttaaagtctttggatgtct 32309130  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 33364759 - 33364663
Alignment:
Q  82 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 178  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364759 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 33364496 - 33364360
Alignment:
Q  258 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 357  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  33364496 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 33364398  T
Q  358 tgtccctccaattctcaacttaaagtctttgggtgtct 395  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  33364397 tctccatcctactctcatcttaaagtctttggttgtct 33364360  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 290
Target Start/End: Complemental strand, 22208525 - 22208490
Alignment:
Q  255 tcattttggcatcatgctcttcatatggctacttat 290  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22208525 tcattttggcatcatgctcttcaaatggctacttat 22208490  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 16592721 - 16592763
Alignment:
Q  255 tcattttggcatcatgctcttcatatggctacttatttgttaa 297  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  16592721 tcattttggcatcatgctcttcacatggcaacttatatgttaa 16592763  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 33164133 - 33164183
Alignment:
Q  257 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 307  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  33164133 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 33164183  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 30330131 - 30330227
Alignment:
Q  82 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 178  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330131 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 30330394 - 30330530
Alignment:
Q  258 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 357  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  30330394 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 30330492  T
Q  358 tgtccctccaattctcaacttaaagtctttgggtgtct 395  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  30330493 tctccatcctactctcatcttaaagtctttggctgtct 30330530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  122 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 169  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 9934279 - 9934245
Alignment:
Q  255 tcattttggcatcatgctcttcatatggctactta 289  Q
    ||||||||||||||||||||||| |||||||||||    
T  9934279 tcattttggcatcatgctcttcaaatggctactta 9934245  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 24208117 - 24208167
Alignment:
Q  257 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 307  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  24208117 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 24208167  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 45027897 - 45027947
Alignment:
Q  257 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 307  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45027897 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45027947  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 45032745 - 45032795
Alignment:
Q  257 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 307  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45032745 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  122 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 169  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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