View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_31 (Length: 395)
Name: NF9444_low_31
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 11826431 - 11826806
Alignment:
| Q |
1 |
atataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactgacattttttatgccaaaatgtacaac |
100 |
Q |
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| T |
11826431 |
atataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactaacattttttatgccaaaatgtacaac |
11826530 |
T |
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| Q |
101 |
agcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgnnnnnnnnnnnnacag |
200 |
Q |
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| T |
11826531 |
agcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacac--atatatatataacag |
11826628 |
T |
|
| Q |
201 |
caaaataacaaagtgcactaattaatcatgtttcttaatgcgtacacacgagtagctattctatatatttgagatctttatatgcgatacataaattgcc |
300 |
Q |
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| T |
11826629 |
caaaataacaaagtgcactaattaatcatgtttcttaatgcatacacacgagtagctattctatatatttgagatctttatatgcgatacataaattgcc |
11826728 |
T |
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| Q |
301 |
aaaggatgattagttgcccttccatataggttaagatcttgagggttttcagctatgacctaactagtagttaggtct |
378 |
Q |
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| T |
11826729 |
aaaggataattagttgcccttccatataggttaagatcttgagggttttcagctatgacctaactagtagttaggtct |
11826806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 11840528 - 11840606
Alignment:
| Q |
270 |
tgagatctttatatgcgatacataaattgccaaaggatgattagttgcccttccatataggttaagatcttgagggttt |
348 |
Q |
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| T |
11840528 |
tgagatctttatataggatacataaattgccaaaggatcattggttgcccttccttataggttaagatcttgagggttt |
11840606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 11840334 - 11840389
Alignment:
| Q |
119 |
gaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaac |
178 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||| |
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| T |
11840334 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaac |
11840389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 35040395 - 35040359
Alignment:
| Q |
31 |
gtttgatccccaccctcaatataaaaactaacaatac |
67 |
Q |
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| T |
35040395 |
gtttgatccccaccctcagcataaaaactaacaatac |
35040359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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