View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_32 (Length: 383)
Name: NF9444_low_32
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_32 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 28609053 - 28609405
Alignment:
| Q |
15 |
tggacatcacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttag |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28609053 |
tggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttag |
28609152 |
T |
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| Q |
115 |
attgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaatt |
214 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609153 |
attgacaacgatgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaatt |
28609252 |
T |
|
| Q |
215 |
ggttgcgatttatacgtagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttag |
314 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609253 |
ggttgcgatttatacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttag |
28609352 |
T |
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| Q |
315 |
gggatattttagcatcaaacaattttggttcgggctcatcagtgctagttgtg |
367 |
Q |
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| T |
28609353 |
gggatattttagcatcaaacaattttggttcgggctcatcagtgctagttgtg |
28609405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 51 - 367
Target Start/End: Complemental strand, 437815 - 437499
Alignment:
| Q |
51 |
tatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatctta |
150 |
Q |
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| T |
437815 |
tatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattgacagcgatgaacaacaatgattctatatctta |
437716 |
T |
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| Q |
151 |
ttcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaatcgt |
250 |
Q |
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| T |
437715 |
ttcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaatttatatatagttggacaagggaatcgt |
437616 |
T |
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| Q |
251 |
aggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggttcgggct |
350 |
Q |
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||||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||| | ||||||| |||| | | |
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| T |
437615 |
aggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacattttggcatcagataattttgtttcgagat |
437516 |
T |
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| Q |
351 |
catcagtgctagttgtg |
367 |
Q |
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|||| |||||||||||| |
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| T |
437515 |
catctgtgctagttgtg |
437499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 48 - 367
Target Start/End: Original strand, 13652957 - 13653276
Alignment:
| Q |
48 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
147 |
Q |
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|||||||| | |||||||||| |||||| || ||||| |||| || || ||||| ||| ||||||| ||| | | |||| | |||||||| |||||| |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
148 |
ttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaat |
247 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttagacaaatttggttgtgatttatacatagttggacaagggcat |
13653156 |
T |
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| Q |
248 |
cgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggttcgg |
347 |
Q |
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| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||| |||||| |
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| T |
13653157 |
catagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgg |
13653256 |
T |
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| Q |
348 |
gctcatcagtgctagttgtg |
367 |
Q |
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| T |
13653257 |
gttcatcagtgttagttgtg |
13653276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 367
Target Start/End: Original strand, 13660453 - 13660776
Alignment:
| Q |
44 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
143 |
Q |
| |
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|||||||||||| | |||||||||| |||||| || ||||| |||| || || ||||| ||| ||||||| ||| | | |||| | ||||||||||| |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
|
| Q |
144 |
tatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacaggg |
243 |
Q |
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|||| ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||||| || |
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| T |
13660553 |
tatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgatttatacatagttggacaagg |
13660652 |
T |
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| Q |
244 |
aaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaaacaattttggt |
343 |
Q |
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||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||| || |
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| T |
13660653 |
gcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagt |
13660752 |
T |
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| Q |
344 |
tcgggctcatcagtgctagttgtg |
367 |
Q |
| |
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||||| || || ||||| |||||| |
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| T |
13660753 |
tcgggttcgtctgtgctcgttgtg |
13660776 |
T |
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