View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_35 (Length: 381)
Name: NF9444_low_35
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 70 - 366
Target Start/End: Complemental strand, 6697443 - 6697146
Alignment:
| Q |
70 |
attgtagaagtttaaccccgacgcaacattgttcctggttgtatgttttaatatatgcattaatgatatacttcgatgcaaggcca-gaccagtatcatg |
168 |
Q |
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| T |
6697443 |
attgtagaagtctaaccccgacccaacattgttcctggttgtatgttttaatatatgcattaatgatatacttcgatgcaaggccatgaccagtatcatg |
6697344 |
T |
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| Q |
169 |
atggtttaaggaaccacatggtgtaaccnnnnnnnnnnnnnggaaccacatgaggttgttcttgagcacaactgcaaatgaaatgatgaatataattgat |
268 |
Q |
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| T |
6697343 |
atggtttaaggaaccacatggtgtaaccaaaaaacaaaaaaggaaccacatgaggttgttcttgagcacaactgcaaatgaaatgatgaatacaattgat |
6697244 |
T |
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| Q |
269 |
cttacactcataattgatcagcatatatagtttgaaatcgatgacatcacaatattgttatatctctaactcaaaatttgatacttgaatgtgtttgt |
366 |
Q |
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| T |
6697243 |
cttacactcataattgatcagcatatatagtttgaaatcgatgacatcacaatattgttatatctctaactcaaaatttaatacttgaatgtgtttgt |
6697146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6697547 - 6697476
Alignment:
| Q |
1 |
agaatacccctcttaaacaagttatatctatgaataacagtcgatatgtgtcagatgctaaatgtaaatatt |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
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| T |
6697547 |
agaatacccctcttaaacaagttatatctatgaataacagtcgaaatgtgttagacgctaaatgtaaatatt |
6697476 |
T |
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