View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_36 (Length: 363)

Name: NF9444_low_36
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_36
NF9444_low_36
[»] scaffold0038 (1 HSPs)
scaffold0038 (185-325)||(24304-24447)
[»] chr6 (10 HSPs)
chr6 (185-325)||(28223806-28223949)
chr6 (5-82)||(32784737-32784814)
chr6 (256-296)||(28328740-28328780)
chr6 (256-296)||(28506376-28506416)
chr6 (3-82)||(25924857-25924936)
chr6 (5-81)||(28965835-28965911)
chr6 (29-84)||(27102112-27102167)
chr6 (29-84)||(27143934-27143989)
chr6 (44-81)||(25127867-25127904)
chr6 (46-86)||(33656771-33656811)
[»] chr4 (17 HSPs)
chr4 (23-87)||(47998588-47998652)
chr4 (20-78)||(43759161-43759219)
chr4 (5-83)||(51224833-51224911)
chr4 (2-87)||(20956574-20956659)
chr4 (33-81)||(169525-169573)
chr4 (5-80)||(45548779-45548854)
chr4 (23-81)||(49424833-49424891)
chr4 (23-87)||(3078920-3078985)
chr4 (23-87)||(16019470-16019535)
chr4 (42-83)||(25476631-25476672)
chr4 (44-81)||(34995320-34995357)
chr4 (38-83)||(39010165-39010210)
chr4 (37-82)||(51389101-51389146)
chr4 (1-81)||(6290462-6290541)
chr4 (4-80)||(34770033-34770108)
chr4 (1-81)||(53662419-53662499)
chr4 (5-81)||(54165156-54165232)
[»] chr3 (15 HSPs)
chr3 (23-81)||(49196696-49196754)
chr3 (21-86)||(14957831-14957896)
chr3 (21-81)||(52963326-52963387)
chr3 (23-87)||(31017407-31017471)
chr3 (3-81)||(48945847-48945925)
chr3 (16-81)||(18169157-18169222)
chr3 (23-83)||(29573368-29573429)
chr3 (5-82)||(41877687-41877764)
chr3 (21-81)||(51410806-51410866)
chr3 (23-90)||(20380902-20380969)
chr3 (23-86)||(32457768-32457831)
chr3 (23-86)||(48944723-48944786)
chr3 (23-81)||(55344309-55344367)
chr3 (44-81)||(27936964-27937001)
chr3 (5-78)||(40478282-40478355)
[»] chr1 (17 HSPs)
chr1 (23-89)||(9445100-9445166)
chr1 (23-82)||(49020416-49020476)
chr1 (23-80)||(15182596-15182653)
chr1 (5-81)||(26501295-26501371)
chr1 (5-88)||(39669799-39669882)
chr1 (23-81)||(45042261-45042319)
chr1 (44-81)||(1690446-1690483)
chr1 (20-81)||(9011645-9011706)
chr1 (23-80)||(18959005-18959062)
chr1 (44-81)||(21433435-21433472)
chr1 (5-82)||(37669397-37669474)
chr1 (21-85)||(49931549-49931614)
chr1 (44-80)||(8959240-8959276)
chr1 (48-84)||(23226484-23226520)
chr1 (21-81)||(42299197-42299257)
chr1 (23-83)||(42615858-42615918)
chr1 (29-85)||(42792296-42792352)
[»] chr7 (15 HSPs)
chr7 (4-81)||(40212483-40212560)
chr7 (1-81)||(3344856-3344936)
chr7 (2-78)||(31436422-31436498)
chr7 (23-81)||(19426580-19426638)
chr7 (23-85)||(31365092-31365154)
chr7 (23-81)||(38096452-38096510)
chr7 (33-82)||(23844964-23845013)
chr7 (29-82)||(39369301-39369354)
chr7 (1-81)||(3341699-3341779)
chr7 (44-92)||(19880265-19880313)
chr7 (21-80)||(23910261-23910321)
chr7 (5-81)||(29609859-29609935)
chr7 (23-82)||(34108867-34108927)
chr7 (1-81)||(44511139-44511219)
chr7 (1-81)||(48522156-48522236)
[»] chr5 (19 HSPs)
chr5 (44-85)||(42225800-42225841)
chr5 (1-85)||(12718371-12718455)
chr5 (23-81)||(9168177-9168236)
chr5 (21-90)||(9939442-9939512)
chr5 (23-87)||(18695312-18695377)
chr5 (5-82)||(22920487-22920564)
chr5 (5-86)||(36548375-36548456)
chr5 (1-85)||(12779597-12779681)
chr5 (10-81)||(14914372-14914443)
chr5 (45-87)||(15622038-15622080)
chr5 (42-84)||(19952008-19952050)
chr5 (29-90)||(31748327-31748389)
chr5 (23-81)||(38500943-38501001)
chr5 (1-38)||(10372233-10372270)
chr5 (1-86)||(35972569-35972654)
chr5 (23-83)||(3263521-3263581)
chr5 (23-87)||(6529013-6529077)
chr5 (5-81)||(19271859-19271935)
chr5 (23-82)||(40829413-40829473)
[»] scaffold0024 (2 HSPs)
scaffold0024 (21-81)||(60469-60529)
scaffold0024 (33-81)||(91948-91996)
[»] chr2 (10 HSPs)
chr2 (23-85)||(6639485-6639547)
chr2 (44-85)||(7121386-7121427)
chr2 (10-46)||(9051965-9052001)
chr2 (5-81)||(27540015-27540091)
chr2 (23-78)||(43665625-43665680)
chr2 (23-85)||(28165125-28165187)
chr2 (44-81)||(5031923-5031960)
chr2 (23-91)||(35334510-35334579)
chr2 (5-81)||(1298194-1298270)
chr2 (33-85)||(39454262-39454314)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-82)||(16974-17055)
[»] chr8 (16 HSPs)
chr8 (23-81)||(10644814-10644873)
chr8 (23-90)||(13884173-13884240)
chr8 (23-82)||(21273723-21273782)
chr8 (23-81)||(7678732-7678790)
chr8 (23-81)||(16699581-16699639)
chr8 (23-81)||(28927681-28927739)
chr8 (44-82)||(35937546-35937584)
chr8 (1-87)||(43873682-43873768)
chr8 (8-81)||(1332466-1332539)
chr8 (23-82)||(5600999-5601059)
chr8 (23-82)||(5639561-5639621)
chr8 (5-53)||(23587652-23587700)
chr8 (33-81)||(26294189-26294237)
chr8 (33-81)||(26307446-26307494)
chr8 (23-87)||(34970201-34970265)
chr8 (1-81)||(39021434-39021514)
[»] scaffold0184 (1 HSPs)
scaffold0184 (23-81)||(16607-16665)
[»] scaffold0078 (1 HSPs)
scaffold0078 (23-81)||(56179-56237)
[»] scaffold0049 (1 HSPs)
scaffold0049 (44-81)||(72203-72240)


Alignment Details
Target: scaffold0038 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 24304 - 24447
Alignment:
Q  185 ttaaaatgtaatgttgtcaataaaatatagcatatttgagaaatatgctataatcatggctctcnnnnnnnct---actaaatcagttgctacaaccagt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||   ||||||||||||||||||| ||||    
T  24304 ttaaaatgtaatgttgtcaataaaatatagcatatttgagaaatatgctataaccatggctctctttttttcttctactaaatcagttgctacaatcagt 24403  T
Q  282 aatgattttgatttagatattaaaatacaaactctaatcatcaa 325  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  24404 aatgattttgatttaaatattaaaatacaaactctaatcatcaa 24447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 28223806 - 28223949
Alignment:
Q  185 ttaaaatgtaatgttgtcaataaaatatagcatatttgagaaatatgctataatcatggctctcnnnnnnnct---actaaatcagttgctacaaccagt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||   ||||||||||||||||||| ||||    
T  28223806 ttaaaatgtaatgttgtcaataaaatatagcatatttgagaaatatgctataaccatggctctctttttttcttctactaaatcagttgctacaatcagt 28223905  T
Q  282 aatgattttgatttagatattaaaatacaaactctaatcatcaa 325  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  28223906 aatgattttgatttaaatattaaaatacaaactctaatcatcaa 28223949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 32784814 - 32784737
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    |||||||||||||  || ||||||||||||| |||||| |||||||| |||||||  || ||||||||| ||||||||    
T  32784814 ataataacatcatataagtatgaaagaaaaagttgtcaaaaagttgtaacaaaataattgtacaaatatcatttctca 32784737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 28328740 - 28328780
Alignment:
Q  256 ctactaaatcagttgctacaaccagtaatgattttgattta 296  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  28328740 ctactaaatcagttgatacaaccagtaatgattttgattta 28328780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 28506376 - 28506416
Alignment:
Q  256 ctactaaatcagttgctacaaccagtaatgattttgattta 296  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  28506376 ctactaaatcagttgatacaaccagtaatgattttgattta 28506416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 25924857 - 25924936
Alignment:
Q  3 gaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||||||||||||||  | ||||| ||| ||| |||||| ||||||||  |||||||||| ||||||||| ||||||||    
T  25924857 gaataataacatcatgtgagtatgagagagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctca 25924936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 28965835 - 28965911
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||| ||||||  | ||||| ||| ||| |||||| |||||||| ||||||||||| ||||||||| |||||||    
T  28965835 ataataatatcatgtgagtatgagagagaaagttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 27102167 - 27102112
Alignment:
Q  29 agaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaa 84  Q
    |||||||||||||| ||| || ||| ||||||||| ||||||||| ||||||||||    
T  27102167 agaaaaaattgtcaaaaaattattagaaaatggttgtacaaatatcatttctcaaa 27102112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 27143989 - 27143934
Alignment:
Q  29 agaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaa 84  Q
    |||||||||||||| ||| || ||| ||||||||| ||||||||| ||||||||||    
T  27143989 agaaaaaattgtcaaaaaattattagaaaatggttgtacaaatatcatttctcaaa 27143934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 25127867 - 25127904
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  25127867 aaagttgttacaaaatggttgtacaaatatcatttctc 25127904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 33656811 - 33656771
Alignment:
Q  46 agttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    |||||| ||||||| ||| ||||||||||||||||||||||    
T  33656811 agttgtcacaaaatagttatacaaatattatttctcaaaaa 33656771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 47998652 - 47998588
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||||||| |||||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  47998652 tatgagagaaaaagttgtcaaaaagttgttacaaaatggttgtacaaatatcatttctctaaaaa 47998588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 43759161 - 43759219
Alignment:
Q  20 aaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattattt 78  Q
    |||||||||||| ||| |||||| ||| |||||| ||||||||| ||||||||||||||    
T  43759161 aaatatgaaagagaaagttgtcaaaaaattgttagaaaatggttgtacaaatattattt 43759219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 51224833 - 51224911
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaa 83  Q
    ||||||||||||||  | ||||| ||| ||| |||||| ||||||||  |||||||||| ||||||||| |||||||||    
T  51224833 ataataacatcatgtgagtatgagagagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcaa 51224911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 20956574 - 20956659
Alignment:
Q  2 agaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    |||||||||||||||||  || |||| ||| ||| || ||| ||| ||||   ||||||||| |||||||||||||||||||||||    
T  20956574 agaataataacatcatgtgaacatgagagagaaagttatcaaaaaattgtagtaaaatggttgtacaaatattatttctcaaaaaa 20956659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 169525 - 169573
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||| |||||||| ||||||||||| ||||||||| |||||||    
T  169525 aaaattgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 45548779 - 45548854
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttct 80  Q
    ||||| ||||||||  | ||||||||||||| |||||| ||| || | ||||||||||| ||||||||| ||||||    
T  45548779 ataatgacatcatgtgagtatgaaagaaaaagttgtcaaaaaattatcacaaaatggttgtacaaatatcatttct 45548854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 49424833 - 49424891
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||| |||||| ||||||||||||||| |||| ||||||||| |||||||    
T  49424833 tatgagagagaaagttgtcaaaaagttgttacaaaaaggttgtacaaatatcatttctc 49424891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 3078920 - 3078985
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||| ||| |||||||||| |||||||||||||| || ||||||||| |||||||| ||||    
T  3078920 tatgagagagaaagttgtcacaaaagttgttacaaaatgattgtacaaatatcatttctcataaaa 3078985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 16019535 - 16019470
Alignment:
Q  23 tatgaaagaaaaaattgtca-caaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||||||||||||||||||  |||||||||| |||||| || ||||||||| |||| ||| ||||    
T  16019535 tatgaaagaaaaaattgtcataaaagttgttagaaaatgattgtacaaatatcatttttcataaaa 16019470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 25476672 - 25476631
Alignment:
Q  42 acaaagttgttacaaaatggttttacaaatattatttctcaa 83  Q
    |||||||||| ||||||||||| ||||||||| |||||||||    
T  25476672 acaaagttgtcacaaaatggttctacaaatataatttctcaa 25476631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 34995357 - 34995320
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  34995357 aaagttgttacaaaatggttgtacaaatataatttctc 34995320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 39010165 - 39010210
Alignment:
Q  38 tgtcacaaagttgttacaaaatggttttacaaatattatttctcaa 83  Q
    ||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctcaa 39010210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 51389101 - 51389146
Alignment:
Q  37 ttgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    |||||| |||||||||||||| ||||| ||||||||| ||||||||    
T  51389101 ttgtcaaaaagttgttacaaagtggttgtacaaatatcatttctca 51389146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6290541 - 6290462
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| ||||| ||| || ||||||||| | | ||||||  ||||||||||||||| ||| ||||||||| |||||||    
T  6290541 gagaataaaaacataatgtaagtatgaaagagaga-ttgtcaagaagttgttacaaaatagttgtacaaatatcatttctc 6290462  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 34770108 - 34770033
Alignment:
Q  4 aataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttct 80  Q
    ||||||||||||||| |||||||| ||| |||||||| | |||  ||| | ||||||||| ||||||||| ||||||    
T  34770108 aataataacatcatgtaaatatgagagagaaaattgtta-aaaaatgtaataaaatggttgtacaaatatcatttct 34770033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53662419 - 53662499
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| |||||||||  ||||||| ||| ||| ||||   ||| |||||||||||| ||| ||||||||| |||||||    
T  53662419 gagaataagaacatcatgtgaatatgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctc 53662499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 54165156 - 54165232
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||||||  | ||||| ||||||| |||||| ||| ||||   ||||||||| ||||||||| |||||||    
T  54165156 ataataacatcatgtgagtatgagagaaaaagttgtcaaaaaattgtagtaaaatggttgtacaaatatcatttctc 54165232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 49196754 - 49196696
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  49196754 tatgagagagaaaattgtcacaaagttgtcacaaaatggttgtacaaatatcatttctc 49196696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 14957896 - 14957831
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    ||||||| |||||||||||| | |||||||| ||||| ||||| ||||||||| ||||||||||||    
T  14957896 aatatgagagaaaaaattgttaaaaagttgtcacaaagtggttgtacaaatatcatttctcaaaaa 14957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 52963326 - 52963387
Alignment:
Q  21 aatatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||    
T  52963326 aatatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctc 52963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 31017407 - 31017471
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||| |||||||||| |||||||||| |||||| || ||||||||| |||||||||||||    
T  31017407 tatgagagagaaaattgtcaaaaagttgttagaaaatgattgtacaaatatcatttctcaaaaaa 31017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48945925 - 48945847
Alignment:
Q  3 gaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||| ||||| |||  ||||||| ||||||||||||||  ||||||| ||||| ||||| ||||||||| |||||||    
T  48945925 gaataaaaacataatgtgaatatgagagaaaaaattgtcaagaagttgtcacaaagtggttgtacaaatatcatttctc 48945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 18169222 - 18169157
Alignment:
Q  16 atgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||| ||| ||| |||||| |||||||| ||||| ||||| ||||||||| |||||||    
T  18169222 atgcaaatatgagagagaaatttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 18169157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 29573368 - 29573429
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaa 83  Q
    ||||| ||| ||| |||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  29573368 tatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctcaa 29573429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 41877764 - 41877687
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||||||||||||  | ||||| ||| ||| |||||| ||||||||  |||||||||| ||||||||| ||||||||    
T  41877764 ataataacatcatgtgagtatgagagagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctca 41877687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 51410866 - 51410806
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||| |||||||||| |||||||| | ||| ||||| ||||||||| |||||||    
T  51410866 aatatgaaagagaaaattgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctc 51410806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 20380902 - 20380969
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaataa 90  Q
    ||||| ||| ||| ||||||  ||||||| ||||| ||||| ||||||||| ||||||||||||||||    
T  20380902 tatgagagagaaagttgtcaagaagttgtcacaaagtggttgtacaaatatcatttctcaaaaaataa 20380969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 32457768 - 32457831
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    ||||| ||| ||| ||||||||||||||| | ||| ||||| ||||||||| ||||||||||||    
T  32457768 tatgagagagaaagttgtcacaaagttgtcaaaaagtggttgtacaaatatcatttctcaaaaa 32457831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 48944723 - 48944786
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    ||||| ||| ||||||||   |||||||||| ||||||||| ||||||||| ||||||||||||    
T  48944723 tatgagagagaaaattgtacaaaagttgttagaaaatggttgtacaaatatcatttctcaaaaa 48944786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 55344309 - 55344367
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||| ||||||||||  ||||| | ||||||||||| ||||||||| |||||||    
T  55344309 tatgaaagagaaaattgtcaagaagttatcacaaaatggttgtacaaatatcatttctc 55344367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 27937001 - 27936964
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  27937001 aaagttgtcacaaaatggttctacaaatattatttctc 27936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 40478282 - 40478355
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattattt 78  Q
    ||||||||||||||  ||||||| | | ||| |||||| ||||||||  |||||||||| ||||||||| ||||    
T  40478282 ataataacatcatgtgaatatgagatagaaagttgtcaaaaagttgtagcaaaatggttgtacaaatatcattt 40478355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 9445166 - 9445100
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaata 89  Q
    ||||||||| ||| |||||| |||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  9445166 tatgaaagagaaagttgtcaaaaagttgttacaaaatggttgtacgaatatcatttctcataaaata 9445100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 49020416 - 49020476
Alignment:
Q  23 tatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||    
T  49020416 tatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctca 49020476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 15182596 - 15182653
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttct 80  Q
    |||||||||||| ||||||| |||||||||| ||||| ||| ||||||||| ||||||    
T  15182596 tatgaaagaaaatattgtcaaaaagttgttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 26501371 - 26501295
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||| ||||||||| || ||||| ||| ||| |||||  |||||| ||||||||||||| ||||||||| |||||||    
T  26501371 ataagaacatcatgtaagtatgagagagaaagttgtccaaaagttattacaaaatggttgtacaaatatcatttctc 26501295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 39669882 - 39669799
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaat 88  Q
    |||||||||| |||  |||||||||   ||| |||||| ||| |||| ||||||||||| ||||||||| ||||||| ||||||    
T  39669882 ataataacattatgtgaatatgaaattgaaagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctctaaaaat 39669799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 45042319 - 45042261
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| |||||||||||||| ||| |||||| ||||| ||| ||||||||| |||||||    
T  45042319 tatgagagaaaaaattgtcaaaaaattgttagaaaatagttgtacaaatatcatttctc 45042261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 1690483 - 1690446
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  1690483 aaagttgtcacaaaatggttgtacaaatattatttctc 1690446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 9011706 - 9011645
Alignment:
Q  20 aaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| ||| ||| ||||  ||||||||| ||||||||||| ||||||||| |||||||    
T  9011706 aaatatgagagagaaagttgtatcaaagttgtcacaaaatggttgtacaaatatcatttctc 9011645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 18959062 - 18959005
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttct 80  Q
    ||||| ||| |||||||||| |||||||| ||||||||||| || |||||| ||||||    
T  18959062 tatgagagagaaaattgtcaaaaagttgtaacaaaatggttgtataaatatcatttct 18959005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 21433435 - 21433472
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  21433435 aaagttgttacaaaatggttgtacaaatatcatttctc 21433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 37669474 - 37669397
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||||||||||||  ||||||| ||| ||| |||| | ||||||||  ||||||| || ||||||||| ||||||||    
T  37669474 ataataacatcatgtgaatatgagagagaaatttgttaaaaagttgtatcaaaatgattgtacaaatatcatttctca 37669397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 49931614 - 49931549
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    ||||||| ||| ||| |||||||||| ||||||| |||||| || ||||||||| |||||||||||    
T  49931614 aatatgagagagaaagttgtcacaaaagttgttaaaaaatgattgtacaaatatcatttctcaaaa 49931549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 8959240 - 8959276
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttct 80  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  8959240 aaagttgttacaaaatggttatacaaatatcatttct 8959276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 23226484 - 23226520
Alignment:
Q  48 ttgttacaaaatggttttacaaatattatttctcaaa 84  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  23226484 ttgtcacaaaatggttgtacaaatattatttctcaaa 23226520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 42299197 - 42299257
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||| | |||||||||||  ||| || | ||||||||||| |||||||||||||||||    
T  42299197 aatatgagaaaaaaaattgtctaaaaattatcacaaaatggttgtacaaatattatttctc 42299257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 42615918 - 42615858
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaa 83  Q
    ||||||||||||| |||||| ||| || ||| |||||| || ||||||||| |||||||||    
T  42615918 tatgaaagaaaaagttgtcaaaaaattattaaaaaatgattgtacaaatatcatttctcaa 42615858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 42792352 - 42792296
Alignment:
Q  29 agaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||||||||||||| | |||| | ||| ||||| ||||||||| |||||||||||    
T  42792352 agaaaaaattgtcacataattgtaataaagtggttgtacaaatatcatttctcaaaa 42792296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 40212483 - 40212560
Alignment:
Q  4 aataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||||| ||| |||||||| ||| |||||||||| ||| |||||| ||| ||||| |||||||||||||||||    
T  40212483 aataaaaacataatgtaaatatgagagagaaaattgtcaaaaaattgttagaaagtggttgtacaaatattatttctc 40212560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3344936 - 3344856
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||||||||||  ||||||| ||| ||| | |||| ||| |||||| ||||||||  ||||||||| |||||||    
T  3344936 gagaataataacatcatgtgaatatgagagagaaagtcgtcaaaaaattgttaaaaaatggtgatacaaatatcatttctc 3344856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 31436498 - 31436422
Alignment:
Q  2 agaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattattt 78  Q
    ||||||| || || ||| || ||||| |||||||||||||| |||||||| | ||||||||| ||||||||| ||||    
T  31436498 agaataagaatataatgtaagtatgagagaaaaaattgtcaaaaagttgtcaaaaaatggttgtacaaatatcattt 31436422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 19426638 - 19426580
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||| |||||| |||||||| ||||||||||| ||||||||| |||||||    
T  19426638 tatgagagagaaagttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 19426580  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 31365092 - 31365154
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    ||||| |||||||||||| | |||||||||  ||||||||| ||||||||| |||| ||||||    
T  31365092 tatgagagaaaaaattgttaaaaagttgttgtaaaatggttgtacaaatatcatttatcaaaa 31365154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 38096452 - 38096510
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||| | | |||||| ||| |||| ||||||||||| |||||||||||||||||    
T  38096452 tatgaaagagagagttgtcaaaaaattgtcacaaaatggttgtacaaatattatttctc 38096510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 23845013 - 23844964
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    |||||||||||||| || ||||||||| ||| ||||||||| ||||||||    
T  23845013 aaaattgtcacaaaattattacaaaattgttgtacaaatatcatttctca 23844964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 39369354 - 39369301
Alignment:
Q  29 agaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||||| || ||| ||||||||||||||| |||| ||||||||| ||||||||    
T  39369354 agaaaaagttatcaaaaagttgttacaaaagggttgtacaaatatcatttctca 39369301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3341779 - 3341699
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||||||||||  | ||||| ||| ||| | |||  |||||| ||| ||||||||| ||||||||| |||||||    
T  3341779 gagaataataacatcatgtgagtatgagagagaaagtcgtcgaaaagttcttaaaaaatggttgtacaaatatcatttctc 3341699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 19880265 - 19880313
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctcaaaaaataatg 92  Q
    |||||||| ||||| ||||| |||||| || ||||||||||||||||||    
T  19880265 aaagttgtcacaaattggttgtacaaacatcatttctcaaaaaataatg 19880313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 23910261 - 23910321
Alignment:
Q  21 aatatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttct 80  Q
    ||||||| |||||| |||||||| |||||||| | ||||||||| ||||||||| ||||||    
T  23910261 aatatgagagaaaatattgtcacaaaagttgtcaaaaaatggttgtacaaatatcatttct 23910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 29609859 - 29609935
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||| || ||||| ||| ||| |||||| ||||||||   ||||| ||| ||||||||| |||||||    
T  29609859 ataataacatcatgtaagtatgagagagaaagttgtcaaaaagttgtagtaaaatagttgtacaaatatgatttctc 29609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 34108867 - 34108927
Alignment:
Q  23 tatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||| |||| |||| ||||||||    
T  34108867 tatgagagagaaaattgtcacaaaagttgttagaaaatggttgtacatatatcatttctca 34108927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44511219 - 44511139
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| |||||||||  | ||||||||| ||| ||||   |||||||| ||||||||||| ||| ||||| |||||||    
T  44511219 gagaataagaacatcatgtgagtatgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctc 44511139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48522236 - 48522156
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||| |||  | ||||| ||||||| |||||  ||||||||   ||||||||| ||||||||| |||||||    
T  48522236 gagaataataacataatgtgagtatgagagaaaaagttgtctaaaagttgtacaaaaatggttgtacaaatatcatttctc 48522156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 42225800 - 42225841
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  42225800 aaagttgttacaaaatggttttacaaatatcatttctcaaaa 42225841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12718371 - 12718455
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||||| ||||| |||  ||||||| ||| ||| |||||| |||||||| ||||| ||||| ||||||||| |||||||||||    
T  12718371 gagaataaaaacataatgtgaatatgagagataaagttgtcaaaaagttgtcacaaattggttgtacaaatatcatttctcaaaa 12718455  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 9168177 - 9168236
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||| |||||||||||||| |||||||  |||||||| |||||||||||||||||    
T  9168177 tatgaaagagaaaattgtcacaaaagttgttaggaaatggttgtacaaatattatttctc 9168236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 9939442 - 9939512
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaag-ttgttacaaaatggttttacaaatattatttctcaaaaaataa 90  Q
    ||||||| ||| ||||||||||||||  |||||||||||||||  || |||||| ||||||||||||||||    
T  9939442 aatatgagagagaaaattgtcacaaaacttgttacaaaatggtagtataaatatcatttctcaaaaaataa 9939512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 18695377 - 18695312
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||| ||| |||||||||| ||||||||||||||||| ||||||||| ||||||| |||||    
T  18695377 tatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctctaaaaa 18695312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 22920487 - 22920564
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    |||| |||||||||  | ||||| ||| ||| |||||  ||| |||||||||||||||| ||||||||||||||||||    
T  22920487 ataagaacatcatgtgagtatgagagagaaagttgtccaaaatttgttacaaaatggttgtacaaatattatttctca 22920564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 36548375 - 36548456
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    |||||| |||||||  | ||||| ||| ||| |||||| |||||||| ||||||||||| ||||||||| ||||||| ||||    
T  36548375 ataatagcatcatgtgagtatgagagagaaagttgtcagaaagttgtcacaaaatggttatacaaatatcatttctctaaaa 36548456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12779597 - 12779681
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||||| ||||| |||  | ||||| ||| ||| |||||| |||||||| ||||| ||||| ||||||||| |||||||||||    
T  12779597 gagaataaaaacataatgtgagtatgagagataaagttgtcaaaaagttgtcacaaattggttgtacaaatatcatttctcaaaa 12779681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 14914443 - 14914372
Alignment:
Q  10 aacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||  |||||| |||| ||| |||||  |||||||| ||||||||||| ||||||||| |||||||    
T  14914443 aacatcatgtgaatatgtaagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 15622080 - 15622038
Alignment:
Q  45 aagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||    
T  15622080 aagttgtcacaaattggttatacaaatattatttctcaaaaaa 15622038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 19952050 - 19952008
Alignment:
Q  42 acaaagttgttacaaaatggttttacaaatattatttctcaaa 84  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||    
T  19952050 acaaatttgtcacaaaatggttttacaaatatcatttctcaaa 19952008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 31748389 - 31748327
Alignment:
Q  29 agaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaaaaaataa 90  Q
    ||||||| |||||||||| ||||| | ||||| ||| ||||||||| ||||||||||||||||    
T  31748389 agaaaaagttgtcacaaaagttgtaaaaaaatagttgtacaaatatcatttctcaaaaaataa 31748327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 38501001 - 38500943
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||| ||| |||||| ||| |||| ||||||||||| ||||||||| |||||||    
T  38501001 tatgaaagagaaagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctc 38500943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10372233 - 10372270
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaatt 38  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  10372233 gagaataataacatcatgtaaatatgaaagagaaaatt 10372270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35972654 - 35972569
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaa 86  Q
    ||||||||||||||||||  | ||| | ||| |||||||||| |||  ||| |||||||| || ||||||||| ||||| ||||||    
T  35972654 gagaataataacatcatgtgagtataagagagaaaattgtcaaaaaaatgtaacaaaatgattgtacaaatatcatttcacaaaaa 35972569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 3263521 - 3263581
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaa 83  Q
    ||||| ||||||||||||   |||||||| ||||| ||||| ||||||||| |||||||||    
T  3263521 tatgagagaaaaaattgtacaaaagttgtcacaaattggttgtacaaatatcatttctcaa 3263581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 6529077 - 6529013
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||||||| |||||| ||| |||||| |||||  || ||||||||| |||||||||||||    
T  6529077 tatgagagaaaaagttgtcaaaaaattgttagaaaataattgtacaaatatcatttctcaaaaaa 6529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 19271935 - 19271859
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||| |||||||||  | ||||| ||| ||| |||||  || ||||||||||||||||| ||||||||| |||||||    
T  19271935 ataagaacatcatgtgagtatgagagagaaagttgtctaaacgttgttacaaaatggttgtacaaatatcatttctc 19271859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 40829473 - 40829413
Alignment:
Q  23 tatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||||||||||||||| ||| || ||| ||||||||| ||||||||| ||||||||    
T  40829473 tatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatatcatttctca 40829413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 60529 - 60469
Alignment:
Q  21 aatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||||||| |||||| |||||||| | ||||||||| ||||||||| |||||||    
T  60529 aatatgaaagaaaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 60469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 91996 - 91948
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||| |||||||||| ||| ||||| |||||||||||||||||    
T  91996 aaaattgtcaaaaagttgttagaaagtggttgtacaaatattatttctc 91948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 6639485 - 6639547
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    ||||| ||| ||| |||| | |||||||||| ||||||||| |||||||||||||||||||||    
T  6639485 tatgagagagaaagttgttaaaaagttgttagaaaatggttgtacaaatattatttctcaaaa 6639547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 7121427 - 7121386
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  7121427 aaagttgttacaaaatggttatacaaatatcatttctcaaaa 7121386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 9052001 - 9051965
Alignment:
Q  10 aacatcatgcaaatatgaaagaaaaaattgtcacaaa 46  Q
    ||||| |||||||||||||||||||||||||||||||    
T  9052001 aacataatgcaaatatgaaagaaaaaattgtcacaaa 9051965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 27540091 - 27540015
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||||||||||||  | ||||| ||||||| |||||| ||||||||  |||||| ||| ||||||||| |||||||    
T  27540091 ataataacatcatgtgagtatgagagaaaaagttgtcaaaaagttgtagcaaaattgttgtacaaatatgatttctc 27540015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 43665680 - 43665625
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattattt 78  Q
    ||||| |||||||||||||| |||||||||| ||| ||||| ||||||||| ||||    
T  43665680 tatgagagaaaaaattgtcaaaaagttgttaaaaagtggttgtacaaatatcattt 43665625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 28165187 - 28165125
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    ||||| ||| |||||||||  |||||||| ||||||||||| ||||| ||| |||||||||||    
T  28165187 tatgagagagaaaattgtctaaaagttgtcacaaaatggttgtacaagtatcatttctcaaaa 28165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 5031960 - 5031923
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  5031960 aaagttgttacaaaatggttgtacaaatatcatttctc 5031923  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 35334579 - 35334510
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctcaaaaaataat 91  Q
    ||||| ||||| |||||| ||||| ||| ||| ||||||||| ||||||||| |||||||||||| ||||    
T  35334579 tatgagagaaagaattgttacaaaagttattataaaatggttgtacaaatatcatttctcaaaaactaat 35334510  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 1298270 - 1298194
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||  || ||||| ||| |||||||||| ||| || |  |||||||||| ||||||||| |||||||    
T  1298270 ataataacatcatataagtatgagagagaaaattgtcaaaaaattatagcaaaatggttctacaaatatcatttctc 1298194  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 39454262 - 39454314
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaa 85  Q
    |||||| ||| |||||||| ||||||||||| ||||||||| |||| ||||||    
T  39454262 aaaattatcaaaaagttgtcacaaaatggttatacaaatatcatttttcaaaa 39454314  T

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Target: scaffold0172 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17055 - 16974
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||||||||||||||||  | ||||| ||| ||| |||||| ||||||||   ||||||||| ||||||||| ||||||||    
T  17055 gagaataataacatcatgtgagtatgagagagaaagttgtcaaaaagttgtagtaaaatggttgtacaaatatcatttctca 16974  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 10644814 - 10644873
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaa-gttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||| |||||||||| ||||||||||||||||| ||||||||| |||||||    
T  10644814 tatgagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctc 10644873  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 13884173 - 13884240
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaataa 90  Q
    ||||| ||| ||| ||||||||||||||| | |||||| || ||||||||| ||||||||||| ||||    
T  13884173 tatgagagagaaagttgtcacaaagttgtcaaaaaatgattgtacaaatatcatttctcaaaatataa 13884240  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 21273723 - 21273782
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||| ||||||||||  ||||||| ||||||||||| ||||||||| ||||||||    
T  21273723 tatgagagataaaattgtcaagaagttgtcacaaaatggttgtacaaatatcatttctca 21273782  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 7678790 - 7678732
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||||||||||||||||||| | ||| ||||| ||||||||| |||||||    
T  7678790 tatgagagagaaaattgtcacaaagttgtcaaaaagtggttgtacaaatatcatttctc 7678732  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 16699581 - 16699639
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| ||| ||||| |||||||||||| |||||||| ||||||||| |||||||    
T  16699581 tatgagagagaaagttgtctcaaagttgttaccaaatggttgtacaaatatcatttctc 16699639  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 28927739 - 28927681
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| |||||||||||| | |||||||| ||||| ||||| ||||||||| |||||||    
T  28927739 tatgagagaaaaaattgttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 28927681  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 35937546 - 35937584
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  35937546 aaagttgttacaaaatggttgtacaaatatcatttctca 35937584  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43873682 - 43873768
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    |||||||| ||||| |||  | ||||||||| | | |||||| ||| |||| ||||||||||| ||||||||| |||||||| ||||    
T  43873682 gagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctcataaaa 43873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 1332466 - 1332539
Alignment:
Q  8 ataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||| ||||||  ||||||||||| ||| |||||| ||| |||||| ||||||||| ||||| ||| |||||||    
T  1332466 ataatatcatgtgaatatgaaagagaaagttgtcaaaaaattgttataaaatggttgtacaattatcatttctc 1332539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 5600999 - 5601059
Alignment:
Q  23 tatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||||||||||||||| |||||||| | ||||||||| | ||||||| ||||||||    
T  5600999 tatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctca 5601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 5639621 - 5639561
Alignment:
Q  23 tatgaaagaaaaaattgtcac-aaagttgttacaaaatggttttacaaatattatttctca 82  Q
    ||||| ||||||||||||||| |||||||| | ||||||||| | ||||||| ||||||||    
T  5639621 tatgagagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctca 5639561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 23587700 - 23587652
Alignment:
Q  5 ataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgtta 53  Q
    |||| |||||||||  ||||| |||||||||||||||||||| ||||||    
T  23587700 ataagaacatcatgtgaatataaaagaaaaaattgtcacaaaattgtta 23587652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 26294237 - 26294189
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||| |||||||| ||||||||||| ||| ||||| |||||||    
T  26294237 aaaattgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctc 26294189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 26307494 - 26307446
Alignment:
Q  33 aaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||| |||||||| ||||||||||| ||| ||||| |||||||    
T  26307494 aaaattgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctc 26307446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 34970265 - 34970201
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctcaaaaaa 87  Q
    ||||| ||| ||| |||||| ||||||||||||||| | || ||||||||| ||||||| |||||    
T  34970265 tatgagagagaaagttgtcaaaaagttgttacaaaaggattgtacaaatatcatttctctaaaaa 34970201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39021434 - 39021514
Alignment:
Q  1 gagaataataacatcatgcaaatatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||| ||||| |||  | ||||||||| | | |||||| |||||| | ||||||||||| ||||||||| |||||||    
T  39021434 gagaataaaaacataatgtgagtatgaaagagagagttgtcaaaaagttatcacaaaatggttgtacaaatatcatttctc 39021514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 16607 - 16665
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| |||||| ||  |||||||||||||||||||| ||||||||| |||||||    
T  16607 tatgagagagaaaattatctaaaagttgttacaaaatggttgtacaaatatcatttctc 16665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 56237 - 56179
Alignment:
Q  23 tatgaaagaaaaaattgtcacaaagttgttacaaaatggttttacaaatattatttctc 81  Q
    ||||| ||| |||||| ||  |||||||||||||||||||| ||||||||| |||||||    
T  56237 tatgagagagaaaattatctaaaagttgttacaaaatggttgtacaaatatcatttctc 56179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 72203 - 72240
Alignment:
Q  44 aaagttgttacaaaatggttttacaaatattatttctc 81  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  72203 aaagttgttacaaaatggttgtacaaatatcatttctc 72240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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