View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_38 (Length: 362)
Name: NF9444_low_38
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 28896683 - 28896430
Alignment:
| Q |
5 |
atacatagcaccaatttcaacgggtaacacatcatatttatttgcaatccagaacagctgaaaatatcataatcaattaaccctttttccctccatgtta |
104 |
Q |
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| T |
28896683 |
atacatagcaccaatttcaacgggtaacacatcatattt----gcaatccagaacagctgaaaatatcataatcaattaaacctttttccctccatgtta |
28896588 |
T |
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| Q |
105 |
aatccttctttagccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctca |
204 |
Q |
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| T |
28896587 |
aatccttctttagccaaatatataccagaaaatgcattgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctca |
28896488 |
T |
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| Q |
205 |
caattagagatatatgcccactgaaattaaatattcatgcaattgagtgttttatttt |
262 |
Q |
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| T |
28896487 |
caattagagatatatacccactgaaattgaatattcatgcaattgagtgttctatttt |
28896430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 261 - 361
Target Start/End: Complemental strand, 28896383 - 28896282
Alignment:
| Q |
261 |
ttaagttcaacaattgttgtataaaggaaataattagttattttctattttaaaattatttcaa-tttaaagagaataataaaataagtattatctaccc |
359 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
28896383 |
ttaagttcaacaattgttgtataaaggaaataatcagttattttctattttaaaattatttcaattttaaagagaataataaaataagtattaacaaccc |
28896284 |
T |
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| Q |
360 |
ac |
361 |
Q |
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|| |
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| T |
28896283 |
ac |
28896282 |
T |
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