View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_39 (Length: 352)
Name: NF9444_low_39
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_39 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 24423147 - 24422821
Alignment:
| Q |
18 |
atgtggagtatggcttgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacatacttggccgaactacgtaaacaaacgatgg |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24423147 |
atgtggagtatggctcgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacatacttggccgaactacgtaaacaaacgatgg |
24423048 |
T |
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| Q |
118 |
tgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccagtaaaattggtcgaaatccgtgatctaacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24423047 |
tgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccagtaaaattggtcgaaatccgtgatctaacat |
24422948 |
T |
|
| Q |
218 |
ccccaaaatcagcttgggggaagaccttaaaagttctagaaattaggccattgagttcctattaattagaagtgacataaaccaaatgaaattccattca |
317 |
Q |
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| T |
24422947 |
ccccaaaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattagaagtgacataaaccaaatgaaattccattca |
24422848 |
T |
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| Q |
318 |
atcactttgaagttaatctcaacacca |
344 |
Q |
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| T |
24422847 |
atcactttgaagttaatctcaacacca |
24422821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 24410898 - 24411224
Alignment:
| Q |
18 |
atgtggagtatggcttgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacatacttggccgaactacgtaaacaaacgatgg |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24410898 |
atgtggagtatggctcgtagacagggcaatggacggagagctaagctagcatagcgttgcgaataaacatacttggccgaacttcgtaaacaaacgatgg |
24410997 |
T |
|
| Q |
118 |
tgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccagtaaaattggtcgaaatccgtgatctaacat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24410998 |
tgttccattgtttacgactttgtttgtctattcttcttttactagttgttgatctaacacgatagaccagtaaaattggccgaaatccgtgatctaacat |
24411097 |
T |
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| Q |
218 |
ccccaaaatcagcttgggggaagaccttaaaagttctagaaattaggccattgagttcctattaattagaagtgacataaaccaaatgaaattccattca |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24411098 |
ccccaaaatcagcttggggggagaccttaaaagttcgagaaattaggccattgagttcctattaattagaagtgacataaaccaaatgaaattccattca |
24411197 |
T |
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| Q |
318 |
atcactttgaagttaatctcaacacca |
344 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
24411198 |
atcactttgaaggtaatctcaacacca |
24411224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 36996 - 37085
Alignment:
| Q |
88 |
acttggccgaactacgtaaacaaacgatggtgttccattgtttacgactttg--tttgtctattcttcttttactagttgttgatctaaca |
176 |
Q |
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||||| ||||||| |||||||||| || |||||||||||||| ||| |||| ||| | ||||||||||||||||||| ||| ||||||| |
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| T |
36996 |
acttgaccgaactgtgtaaacaaacaattgtgttccattgttttcga-tttgcatttctttattcttcttttactagttattgttctaaca |
37085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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