View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_41 (Length: 339)
Name: NF9444_low_41
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 38755462 - 38755148
Alignment:
| Q |
19 |
gctcgacaaacaatgaccagcaaggcttaaacaatttcaaatctggaaataaaacatatatcctcgccccaccatgtcttaattagcttctgtataacct |
118 |
Q |
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| T |
38755462 |
gctcgacaaacaatgaccagcaaggcttaaacaatttcaaatctggaaataaaacatatatcctcgccccaccatgtcttaattagcttctgtataacct |
38755363 |
T |
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| Q |
119 |
aaactactgtcaccatcgtttgtttcattcatttttttgaataatctgc--------cnnnnnnnnnnctgtgtcttttgtgtgcttgctttacattttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38755362 |
aaactactgtcaccatcgtttgtttcattcatttttttgaataatctgctttttttttttttttttttctgtgtcttttgtgtgcttgctttacattttg |
38755263 |
T |
|
| Q |
211 |
attacctgtacttaaaggacaattattattcccttaataagaatccaataggactgatcaatagtttatcatatttaatttataatcattcatattaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38755262 |
attacctgtacttaaaggacaattattattcccttaataagaatccaataggactgatcaatagtttatcatatttaatttataatcattcatattaaca |
38755163 |
T |
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| Q |
311 |
aaaataattgatgtc |
325 |
Q |
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|||||||||| |||| |
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| T |
38755162 |
aaaataattggtgtc |
38755148 |
T |
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