View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_42 (Length: 336)

Name: NF9444_low_42
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_42
NF9444_low_42
[»] chr6 (8 HSPs)
chr6 (1-320)||(2105756-2106075)
chr6 (143-205)||(9111040-9111102)
chr6 (261-319)||(32695412-32695470)
chr6 (144-209)||(8809300-8809365)
chr6 (143-211)||(5040833-5040901)
chr6 (145-182)||(10772325-10772362)
chr6 (147-196)||(32193874-32193923)
chr6 (143-211)||(34701140-34701208)
[»] chr5 (9 HSPs)
chr5 (228-317)||(34039004-34039093)
chr5 (147-211)||(27903110-27903174)
chr5 (143-209)||(13409543-13409609)
chr5 (143-209)||(22522803-22522869)
chr5 (138-211)||(30488913-30488986)
chr5 (144-197)||(38437902-38437955)
chr5 (144-208)||(3445250-3445314)
chr5 (161-209)||(6424905-6424953)
chr5 (155-199)||(25709738-25709782)
[»] chr1 (13 HSPs)
chr1 (143-199)||(28032277-28032333)
chr1 (144-209)||(25532967-25533032)
chr1 (144-207)||(3528473-3528536)
chr1 (144-211)||(5503765-5503832)
chr1 (142-209)||(32950763-32950830)
chr1 (143-210)||(35308178-35308245)
chr1 (147-189)||(9413795-9413837)
chr1 (147-197)||(16533047-16533097)
chr1 (144-209)||(17139519-17139584)
chr1 (156-209)||(17537693-17537746)
chr1 (144-209)||(44243867-44243932)
chr1 (143-200)||(52441522-52441579)
chr1 (144-200)||(31890760-31890816)
[»] chr4 (11 HSPs)
chr4 (144-209)||(54857617-54857682)
chr4 (143-209)||(7230273-7230339)
chr4 (143-208)||(10401399-10401464)
chr4 (144-209)||(14577509-14577574)
chr4 (144-211)||(13556690-13556757)
chr4 (150-205)||(26008055-26008110)
chr4 (266-321)||(32028192-32028247)
chr4 (164-205)||(15988431-15988472)
chr4 (144-209)||(20799396-20799461)
chr4 (140-205)||(49473635-49473700)
chr4 (143-179)||(2999696-2999732)
[»] chr7 (5 HSPs)
chr7 (140-211)||(39280818-39280889)
chr7 (143-209)||(8237634-8237700)
chr7 (144-211)||(9690313-9690380)
chr7 (144-209)||(10244721-10244786)
chr7 (149-193)||(29166295-29166339)
[»] scaffold0005 (1 HSPs)
scaffold0005 (144-209)||(239801-239866)
[»] chr2 (11 HSPs)
chr2 (141-209)||(29896296-29896364)
chr2 (150-189)||(2328614-2328653)
chr2 (143-205)||(12124538-12124600)
chr2 (144-205)||(7029397-7029458)
chr2 (143-200)||(9517020-9517077)
chr2 (144-209)||(30089043-30089108)
chr2 (144-209)||(30125647-30125712)
chr2 (144-209)||(30243244-30243309)
chr2 (143-199)||(7206118-7206174)
chr2 (145-189)||(20517017-20517061)
chr2 (143-211)||(26999103-26999171)
[»] chr8 (11 HSPs)
chr8 (144-205)||(8072721-8072783)
chr8 (144-209)||(27587215-27587280)
chr8 (143-196)||(33445563-33445616)
chr8 (148-213)||(40919358-40919422)
chr8 (144-196)||(1200360-1200412)
chr8 (144-208)||(6447183-6447247)
chr8 (145-209)||(8717477-8717541)
chr8 (267-319)||(9261934-9261986)
chr8 (141-197)||(27191749-27191805)
chr8 (145-209)||(29652213-29652277)
chr8 (144-208)||(41535317-41535381)
[»] chr3 (4 HSPs)
chr3 (143-197)||(7938717-7938771)
chr3 (143-211)||(4332667-4332735)
chr3 (144-196)||(33223862-33223914)
chr3 (144-208)||(48315027-48315091)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 2105756 - 2106075
Alignment:
Q  1 agtgagttaaacaataaatttgaatgtagaatcaatctcagtataaagactttagtttctagtttgaccttattagaataatttttggaggcaagttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105756 agtgagttaaacaataaatttgaatgtagaatcaatctcagtataaagactttagtttctagtttgaccttattagaataatttttggaggcaagttcaa 2105855  T
Q  101 ttatgttcaagagtaataaaacatatcaaacatatgaaaaagtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccgg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||| ||     
T  2105856 ttatgttcgagagtaataaaacatatcaaacatatgaaaaagtgtcctcgtgagtttagctcggttggtaaaaacaatgcataatatatgtaaggttcga 2105955  T
Q  201 tgttcaaactcagaatcacgacgatccaccatgattttgcagaaactacaatgcatacgatttagaaaatcacaatggatcatcgtcattctgacatatt 300  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2105956 ggttcaaactcagaatcacgacgatccaccatgattttgcagaaactacaatgcatacgatttagaaaatcataatggatcatcgtcattctgacatatt 2106055  T
Q  301 aaccatgataccaaacatat 320  Q
    ||||||||||||||||||||    
T  2106056 aaccatgataccaaacatat 2106075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9111040 - 9111102
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    |||||||||||| ||||||| |||||||  ||||||||||| ||||| |||||||||| ||||    
T  9111040 tgtcctcgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccggggttc 9111102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 32695470 - 32695412
Alignment:
Q  261 tttagaaaatcacaatggatcatcgtcattctgacatattaaccatgataccaaacata 319  Q
    |||| |||||||| |||||| || || ||||||||||||||||| ||||||||||||||    
T  32695470 tttaaaaaatcacgatggattattgtgattctgacatattaaccgtgataccaaacata 32695412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 8809300 - 8809365
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||||||||||  ||| ||||||||||||||| ||||| |||| ||||  ||||||||    
T  8809300 gtcctcgtgagtttagttcaattgataaaaacaatgcataatatatgcaagatccgaggttcaaac 8809365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 5040901 - 5040833
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||| ||||||| |||| || ||||||||| ||||  |||| ||||| |||||||||||||||||||||    
T  5040901 tgtcatcgtgagcttagctcagttggtaaagacaaaacataatatatgcaaggtccggtgttcaaactc 5040833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 10772362 - 10772325
Alignment:
Q  145 tcctcgtgagtttagttcggttggtaaaaacaatgcat 182  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  10772362 tcctcgtgagtttagttcagttggtaaagacaatgcat 10772325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 32193923 - 32193874
Alignment:
Q  147 ctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggt 196  Q
    ||||||||||||| || |||||||| ||||||||||| ||||| ||||||    
T  32193923 ctcgtgagtttagctcagttggtaagaacaatgcataatatatgcaaggt 32193874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 34701140 - 34701208
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||||||  ||||||| |||||||  ||||||||||| ||||| ||||||| |  ||||||||||    
T  34701140 tgtcctcgtgaacttagttcagttggtaggaacaatgcataatatatgcaaggtctgaggttcaaactc 34701208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 34039004 - 34039093
Alignment:
Q  228 accatgattttgcagaaactacaatgcatacgatttagaaaatcacaatggatcatcgtcattctgacatattaaccatgataccaaaca 317  Q
    ||||||||||||||||| |||||| |  ||   ||||| |||||||||||||||||| | ||||||||||||| ||| ||||||||||||    
T  34039004 accatgattttgcagaagctacaaagtgtagcttttaggaaatcacaatggatcatcatgattctgacatattcaccgtgataccaaaca 34039093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 27903110 - 27903174
Alignment:
Q  147 ctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||||||||||| |||||||  ||||||||||| ||||| |||||| ||| ||||||||||    
T  27903110 ctcgtgagtttagttcagttggtatgaacaatgcataatatatgcaaggttcggggttcaaactc 27903174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 13409543 - 13409609
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||| |||| ||||||| || |||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  13409543 tgtcttcgtaagtttagctcagttgataagaacaatgcataatatatacaaggtccggagttcaaac 13409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 22522869 - 22522803
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||| |||| ||||||||||   |||||||||| ||||| |||||||||| ||||||||    
T  22522869 tgtcctcgtgagcttagctcggttggtatggacaatgcataatatatgcaaggtccggggttcaaac 22522803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 30488913 - 30488986
Alignment:
Q  138 aaaagtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||| |||| ||||||| ||||||| |||| ||  ||||||||||| ||||||||||||  || ||||||||||    
T  30488913 aaaaatgtcatcgtgagcttagttcagttgatatgaacaatgcataatatatacaaggtttggggttcaaactc 30488986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 38437955 - 38437902
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtc 197  Q
    ||||||||||| ||| |||| |||||||||||||||||||  |||| |||||||    
T  38437955 gtcctcgtgagcttaattcgattggtaaaaacaatgcataaaatatgcaaggtc 38437902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 3445314 - 3445250
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaa 208  Q
    ||||||||||| |||| || ||||||||  |||||||||| | ||| |||||||||| |||||||    
T  3445314 gtcctcgtgagcttagctcagttggtaaggacaatgcataatgtatgcaaggtccggggttcaaa 3445250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 6424953 - 6424905
Alignment:
Q  161 tcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||   |||||||||| |||||||||||||||| ||||||||    
T  6424953 tcggttggtagggacaatgcataatatatacaaggtccggggttcaaac 6424905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 25709738 - 25709782
Alignment:
Q  155 tttagttcggttggtaaaaacaatgcatactatatacaaggtccg 199  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||    
T  25709738 tttagttcagttgataaaaacaatgcataatatatgcaaggtccg 25709782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 28032277 - 28032333
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccg 199  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||    
T  28032277 tgtcctcgtgagtttagctcggttagtaaaaacaatgcataatatatgcaaggtccg 28032333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 25532967 - 25533032
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| ||||||| |||||||   |||||||||| ||||| |||||||||| ||||||||    
T  25532967 gtcctcgtgagcttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaac 25533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 3528536 - 3528473
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaa 207  Q
    |||||||||||||||| || |||| || |||||||| ||| |||||  ||||||||||||||||    
T  3528536 gtcctcgtgagtttagctcagttgatagaaacaatgtataatatatgtaaggtccggtgttcaa 3528473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 5503832 - 5503765
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||| || |||| || ||||||| ||||||||||||  ||||||||||| ||| ||||||||||    
T  5503832 gtcctcgtaagcttagctcagttggtagaaacaatgcataaaatatacaaggttcggggttcaaactc 5503765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 32950830 - 32950763
Alignment:
Q  142 gtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||| |||||| |||  || ||||||| |||||||||||| ||||| |||||||||| ||||||||    
T  32950830 gtgtccacgtgagcttaactcagttggtataaacaatgcataatatatgcaaggtccggagttcaaac 32950763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 35308178 - 35308245
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaact 210  Q
    |||||||||||| ||||||| |||||||  ||||||||||| |||||||||  || || |||||||||    
T  35308178 tgtcctcgtgagcttagttcagttggtatgaacaatgcataatatatacaaaatctggggttcaaact 35308245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 9413795 - 9413837
Alignment:
Q  147 ctcgtgagtttagttcggttggtaaaaacaatgcatactatat 189  Q
    |||||||||||||||| |||||||| ||||||||||| |||||    
T  9413795 ctcgtgagtttagttcagttggtaagaacaatgcataatatat 9413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 16533097 - 16533047
Alignment:
Q  147 ctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtc 197  Q
    ||||||||||||| ||||||||||  ||||||||||| ||||| |||||||    
T  16533097 ctcgtgagtttagctcggttggtaggaacaatgcataatatatgcaaggtc 16533047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 17139584 - 17139519
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| |||| || |||||||   |||||||||| ||||| |||||||||| ||||||||    
T  17139584 gtcctcgtgagcttagctcagttggtagggacaatgcataatatattcaaggtccggggttcaaac 17139519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 17537693 - 17537746
Alignment:
Q  156 ttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||| ||| ||||||  ||||||||||| |||||||||| ||||||||||||||    
T  17537693 ttagctcgattggtattaacaatgcataatatatacaagatccggtgttcaaac 17537746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 44243867 - 44243932
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||||||| || |||||||  ||||||||||| |||||  ||||||| | ||||||||    
T  44243867 gtcctcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtccagagttcaaac 44243932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 52441579 - 52441522
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccgg 200  Q
    |||||||||||| |||| || ||||||| | |||||||||| ||||| ||||||||||    
T  52441579 tgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaaggtccgg 52441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 31890816 - 31890760
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccgg 200  Q
    |||||||||||||||| || ||||||||  |||||||||| ||||| | ||||||||    
T  31890816 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcgaggtccgg 31890760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 54857682 - 54857617
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| |||| |||||||||| ||||||||||||  |||| |||||||||| ||||||||    
T  54857682 gtcctcgtgagcttagctcggttggtataaacaatgcataaaatatgcaaggtccggggttcaaac 54857617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 7230273 - 7230339
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||| |||| || ||||||||  |||||||||| ||||| |||||||||| ||||||||    
T  7230273 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaac 7230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 10401464 - 10401399
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaa 208  Q
    |||||||||||| ||||||| |||||||  |||||||||||| |||| |||||||| | |||||||    
T  10401464 tgtcctcgtgagcttagttcagttggtatgaacaatgcatacaatatgcaaggtccagggttcaaa 10401399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 14577574 - 14577509
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||||||| || ||||||||  |||||||||| ||||| ||| |||||| ||||||||    
T  14577574 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaac 14577509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 13556757 - 13556690
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    ||||||||||||||||||| |||||||| ||| |||||||  |||| ||| |||||  ||||||||||    
T  13556757 gtcctcgtgagtttagttcagttggtaagaacgatgcataaaatatgcaacgtccgaggttcaaactc 13556690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 26008110 - 26008055
Alignment:
Q  150 gtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    |||||||||||||  |||||||| |||||||||| ||||| ||||||||| |||||    
T  26008110 gtgagtttagttcaattggtaaagacaatgcataatatatgcaaggtccgttgttc 26008055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 32028247 - 32028192
Alignment:
Q  266 aaaatcacaatggatcatcgtcattctgacatattaaccatgataccaaacatatg 321  Q
    ||||||| | ||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  32028247 aaaatcatagtggatcatcgtgattctgacatatctaccgtgataccaaacatatg 32028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 15988431 - 15988472
Alignment:
Q  164 gttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    ||||||||  ||||||||||||||||||||||||||| ||||    
T  15988431 gttggtaaggacaatgcatactatatacaaggtccggggttc 15988472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 20799461 - 20799396
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| |||| || |||||||   |||||||||| ||||| |||||||||| ||||||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaac 20799396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 49473635 - 49473700
Alignment:
Q  140 aagtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    ||||||||||||||| ||||  | ||||||||  |||||||||| ||||| |||||||||| ||||    
T  49473635 aagtgtcctcgtgagcttagcccagttggtaaggacaatgcataatatatgcaaggtccggggttc 49473700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 2999732 - 2999696
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatg 179  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  2999732 tgtcctcgtgagcttagttcggttggtataaacaatg 2999696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 39280889 - 39280818
Alignment:
Q  140 aagtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||| |||||  |||| || |||||||| ||||||||||| ||||| |||||||||| ||||||||||    
T  39280889 aagtgtccccgtgaacttagctcagttggtaagaacaatgcataatatatgcaaggtccggggttcaaactc 39280818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 8237700 - 8237634
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||| ||||||| ||||||||  |||||||||| ||||||||| |||||  ||||||||    
T  8237700 tgtcctcgtgagcttagttctgttggtaaggacaatgcataatatatacaaagtccgaggttcaaac 8237634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 9690380 - 9690313
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    ||||||||||||||||||| |||||||| ||| |||||||  |||| ||| |||||  ||||||||||    
T  9690380 gtcctcgtgagtttagttcagttggtaagaacgatgcataaaatatgcaacgtccgaggttcaaactc 9690313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 10244721 - 10244786
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| |||| || |||||||   |||||||||| ||||| |||||||||| ||||||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaac 10244786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 29166339 - 29166295
Alignment:
Q  149 cgtgagtttagttcggttggtaaaaacaatgcatactatatacaa 193  Q
    |||||| ||||||| ||||||||||||||||||||  ||||||||    
T  29166339 cgtgagcttagttcagttggtaaaaacaatgcataaaatatacaa 29166295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 239801 - 239866
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||||||| || ||||||||  |||||||||| ||||| ||| |||||| ||||||||    
T  239801 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaac 239866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 29896364 - 29896296
Alignment:
Q  141 agtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    |||||||||||||||||| ||| |||| || |||||||||||| ||||| ||||||  || ||||||||    
T  29896364 agtgtcctcgtgagtttaattcagttgatagaaacaatgcataatatatgcaaggtttggggttcaaac 29896296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 2328653 - 2328614
Alignment:
Q  150 gtgagtttagttcggttggtaaaaacaatgcatactatat 189  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  2328653 gtgagtttagttcggttggtaaagacaatgcataatatat 2328614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 12124538 - 12124600
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    ||||| ||||||||||| || ||||||||  |||||||||| ||||| |||||||||| ||||    
T  12124538 tgtccccgtgagtttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttc 12124600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 7029458 - 7029397
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttc 205  Q
    ||||||||||| |||| || ||||||||||||||| |||| ||||| |||| | ||||||||    
T  7029458 gtcctcgtgagattagctcagttggtaaaaacaatacataatatatgcaagatacggtgttc 7029397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 9517077 - 9517020
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccgg 200  Q
    |||||||||||| |||| || |||||||  ||||||||||| |||||||||| |||||    
T  9517077 tgtcctcgtgagattagctcagttggtatgaacaatgcataatatatacaagatccgg 9517020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 30089043 - 30089108
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||  |||| || |||||||   |||||||||| |||||||||||||||| ||||||||    
T  30089043 gtcctcgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaac 30089108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 30125647 - 30125712
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||  |||| || |||||||   |||||||||| |||||||||||||||| ||||||||    
T  30125647 gtcctcgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaac 30125712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 30243244 - 30243309
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||  |||| || ||||||| | |||||||||| |||||||||||| ||| ||||||||    
T  30243244 gtcctcgtgaacttagctcagttggtagagacaatgcataatatatacaaggttcggggttcaaac 30243309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 7206118 - 7206174
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccg 199  Q
    |||||||||||| |||| || ||||||| | |||||||||| ||||| |||||||||    
T  7206118 tgtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtccg 7206174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 20517017 - 20517061
Alignment:
Q  145 tcctcgtgagtttagttcggttggtaaaaacaatgcatactatat 189  Q
    ||||||||||||||| || |||||||| ||||||||||| |||||    
T  20517017 tcctcgtgagtttagctcagttggtaagaacaatgcataatatat 20517061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 26999103 - 26999171
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||||||  ||||||| ||||||| | |||||||||| ||||| ||||||| |  ||||||||||    
T  26999103 tgtcctcgtgaacttagttcagttggtagagacaatgcataatatatgcaaggtctgcggttcaaactc 26999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 8072721 - 8072783
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaa-acaatgcatactatatacaaggtccggtgttc 205  Q
    |||| |||||||||||||| ||| |||||  |||||||||| |||||||||||||||| ||||    
T  8072721 gtccccgtgagtttagttcagttagtaaagtacaatgcataatatatacaaggtccggggttc 8072783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 27587215 - 27587280
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||| |||| || ||||||||  |||||||||  ||||| |||||||||| ||||||||    
T  27587215 gtcctcgtgagcttagctcagttggtaaggacaatgcatgatatatgcaaggtccggggttcaaac 27587280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 33445563 - 33445616
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggt 196  Q
    |||||||||||| |||| || |||||||  ||||||||||| ||||||||||||    
T  33445563 tgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatacaaggt 33445616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 40919422 - 40919358
Alignment:
Q  148 tcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactcag 213  Q
    |||| ||||||| || |||||||  ||||||||||| ||||| |||||||||| ||||||||||||    
T  40919422 tcgtaagtttagctcagttggtaggaacaatgcataatatatgcaaggtccgg-gttcaaactcag 40919358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 1200412 - 1200360
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggt 196  Q
    |||||||||||  |||||||||||||||| | |||||||| ||||| ||||||    
T  1200412 gtcctcgtgagcatagttcggttggtaaagataatgcataatatatgcaaggt 1200360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 6447183 - 6447247
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaa 208  Q
    |||||||||||||||  || |||||||   |||||||||| ||||| |||||||||| |||||||    
T  6447183 gtcctcgtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccggagttcaaa 6447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 8717541 - 8717477
Alignment:
Q  145 tcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||||||||||||| || |||||||   |||||||||| ||||| |||||| ||| ||||||||    
T  8717541 tcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaaggttcggggttcaaac 8717477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 9261934 - 9261986
Alignment:
Q  267 aaatcacaatggatcatcgtcattctgacatattaaccatgataccaaacata 319  Q
    ||||||||||| |||| ||| ||||||| ||| | ||||||||||||||||||    
T  9261934 aaatcacaatgtatcaccgtgattctgatatacttaccatgataccaaacata 9261986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 27191749 - 27191805
Alignment:
Q  141 agtgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtc 197  Q
    |||||||||||||| |||| || |||||||| |||||| |||| ||||| |||||||    
T  27191749 agtgtcctcgtgagcttagctcagttggtaagaacaattcataatatatgcaaggtc 27191805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 29652213 - 29652277
Alignment:
Q  145 tcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaac 209  Q
    ||||| ||||||||| || |||| ||| ||||||||||| ||||| |||||||| | ||||||||    
T  29652213 tcctcatgagtttagctcagttgataagaacaatgcataatatatgcaaggtccagagttcaaac 29652277  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 41535317 - 41535381
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaa 208  Q
    ||||||||||  ||||||| | |||||| ||||||||||| |||||| ||||| ||| |||||||    
T  41535317 gtcctcgtgaacttagttcagctggtaacaacaatgcataatatatataaggttcggagttcaaa 41535381  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 7938717 - 7938771
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtc 197  Q
    |||| ||||||| ||||||| |||||||  ||||||||||| |||||||||||||    
T  7938717 tgtcatcgtgagcttagttcagttggtatgaacaatgcataatatatacaaggtc 7938771  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 4332735 - 4332667
Alignment:
Q  143 tgtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaactc 211  Q
    |||||||||||| |||| || ||||||   || |||||||| ||||| |||||||||| ||||||||||    
T  4332735 tgtcctcgtgagcttagctcagttggtttgaataatgcataatatatccaaggtccggggttcaaactc 4332667  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 33223862 - 33223914
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggt 196  Q
    ||||||||||| |||| || ||||||| |||||||||||| ||||| ||||||    
T  33223862 gtcctcgtgagcttagctcagttggtagaaacaatgcataatatatgcaaggt 33223914  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 48315091 - 48315027
Alignment:
Q  144 gtcctcgtgagtttagttcggttggtaaaaacaatgcatactatatacaaggtccggtgttcaaa 208  Q
    ||||||||||| |||| || ||||||||  | |||||||| ||||| |||||||||| |||||||    
T  48315091 gtcctcgtgagcttagctcagttggtaaggataatgcataatatatgcaaggtccggggttcaaa 48315027  T

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