View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_low_44 (Length: 334)
Name: NF9444_low_44
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_44 |
 | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 37050254 - 37050571
Alignment:
| Q |
1 |
tggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050254 |
tggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccacca |
37050353 |
T |
|
| Q |
101 |
ctcaacacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatcccta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050354 |
ctcaacacgatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatcccta |
37050453 |
T |
|
| Q |
201 |
tcatggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagctga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050454 |
tcatggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagctga |
37050553 |
T |
|
| Q |
301 |
gctagtcttagcagtttc |
318 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
37050554 |
gctagttttagcagtttc |
37050571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 8690119 - 8689848
Alignment:
| Q |
2 |
ggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccac |
101 |
Q |
| |
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|||||||| || |||||||| ||||||||||| || ||||| || | ||| ||||||||||||||||||||||| || |||||||| || | || || |
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| T |
8690119 |
ggtggtgcaaccaccttgatcttcatgctacttggggccaaagcagaaatttccttgctcattctatcagcaatgcctgggaacatggtagttcctcctg |
8690020 |
T |
|
| Q |
102 |
tcaacacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatccctat |
201 |
Q |
| |
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| |||||||||||| || | || ||||| || |||||||| ||||||||||| ||||| |||| ||||| || || || | | |||||| ||||| |
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| T |
8690019 |
aaagcacaatgttaccgtacaagtctttcctgatatcaacatcgcacttcatgatggagttgtatgtggtctcgtgaatgcctgctgcttccattcctat |
8689920 |
T |
|
| Q |
202 |
catggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcagg |
273 |
Q |
| |
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||| ||||| ||||||| || ||||| |||| ||| | || | ||||| ||||||||||| |||||||| |
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| T |
8689919 |
catagatggttggaacaggacctctggacatctgaaacgctcgtctccgatggtgatcacctgtccatcagg |
8689848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 68735 - 68427
Alignment:
| Q |
1 |
tggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccacca |
100 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| || |||||||| || | ||||||| |
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|
| T |
68735 |
tggtggtgcaaccaccttaattttcatgctacttggtgccaatgctgtgatctccttgctcatcctatcagcaatgccggggaacatagtcgtaccacca |
68636 |
T |
|
| Q |
101 |
ctcaacacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatcccta |
200 |
Q |
| |
|
||||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| || || ||||||| ||||| |||||||||| |||||| || | |
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| T |
68635 |
ctcaatacgatgtttccatagagatcctttctaatatcaacatcacacttcatgattgaattgtatgttgtttcatgtataccaggagcttccataccaa |
68536 |
T |
|
| Q |
201 |
tcatggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagctga |
300 |
Q |
| |
|
|||||||||||||||| | ||||| || || ||||| | ||| ||||| || ||||||||||| |||||||||| ||||||| |||||||||||||||| |
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|
| T |
68535 |
tcatggatggctggaagagtacttcaggacaacggaaacgttcggcacctattgtgatcacctgtccatcaggtaactcatagctcttctcaacagctga |
68436 |
T |
|
| Q |
301 |
gctagtctt |
309 |
Q |
| |
|
||| ||||| |
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|
| T |
68435 |
gctcgtctt |
68427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 41388686 - 41388403
Alignment:
| Q |
14 |
accttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactcaacacaatgt |
113 |
Q |
| |
|
|||||||| |||||||| || || ||||| || ||||| |||||||||||||| |||||||||||||||||||| || | ||||||||| | ||||||| |
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| T |
41388686 |
accttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaataccagggaacatagtagtaccaccactaaggacaatgt |
41388587 |
T |
|
| Q |
114 |
taccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatccctatcatggatggctg |
213 |
Q |
| |
|
| ||||| || ||||| || || |||||||||||||||||||| ||||| |||| ||||| || || ||| || |||||| || | |||||| ||||| |
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|
| T |
41388586 |
ttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctcgtgaattccaacagcttccattccaaccatggaaggctg |
41388487 |
T |
|
| Q |
214 |
gaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagc |
297 |
Q |
| |
|
||| | ||| || || || ||||| | |||||||| || ||||| | ||| |||||||| ||||||||| ||||||||||||| |
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| T |
41388486 |
gaaaagaacctcaggacaacggaaacgctcagcaccaatagtgattatctgtccatcaggaagctcatagctcttctcaacagc |
41388403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 1261923 - 1262209
Alignment:
| Q |
5 |
ggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactca |
104 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| | || | || ||||||||||| | |||||||| ||||| ||||| || ||||| ||||| | |
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|
| T |
1261923 |
ggtgcaaccaccttgattttcatgctacttggagcaagagcactgatttccttgctcatacggtcagcaattccaggaaacatggtagaacctccactaa |
1262022 |
T |
|
| Q |
105 |
acacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatccctatcat |
204 |
Q |
| |
|
|||||| || ||||| |||||||||||||| |||||||||||||||||||| ||||| |||| || |||||||| |||| || |||||| || || | |
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|
| T |
1262023 |
gcacaatatttccatatagatccttcctaatatcaacatcacacttcatgatggagttgtatgtagtttcatggattccagtagcttccataccaattag |
1262122 |
T |
|
| Q |
205 |
ggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctc |
291 |
Q |
| |
|
|| |||||||| | ||||| ||||| |||||||| || | ||| || || || ||||| |||||||| | ||| ||| ||||||| |
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|
| T |
1262123 |
agaaggctggaagagtacttcggggcaacggaatctctcggaacctattgttatgacctgtccatcaggcaactcgtagctcttctc |
1262209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 43646940 - 43647232
Alignment:
| Q |
1 |
tggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccacca |
100 |
Q |
| |
|
|||||| || |||||||| || |||||||| |||||||||| || || |||||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
43646940 |
tggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaataccagggaacatagttgaaccacca |
43647039 |
T |
|
| Q |
101 |
ctcaacacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatcccta |
200 |
Q |
| |
|
|| | |||||||| || || |||||||| || || || ||||||||||||||||| ||||| | || ||||| || || |||| || |||||| || | |
|
|
| T |
43647040 |
ctaagaacaatgttgccgtacagatcctttctgatatccacatcacacttcatgatagagttgtaggtggtctcgtgaattccagcagcttccattccga |
43647139 |
T |
|
| Q |
201 |
tcatggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaa |
293 |
Q |
| |
|
|||| ||||| ||||| | ||||||||||| ||||| || ||||| || || ||||| || || |||||||| || |||||| | ||||||| |
|
|
| T |
43647140 |
tcattgatggttggaaaaggacttctgggcaacggaacctctcagctccaattgtgataacttgtccatcaggaagttcatagtttttctcaa |
43647232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 59077 - 59381
Alignment:
| Q |
5 |
ggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactca |
104 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || || ||||| | ||||||||||||||||||||||||||| ||||| ||||| |||| ||| || | |
|
|
| T |
59077 |
ggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgata |
59176 |
T |
|
| Q |
105 |
acacaatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggagattccatccctatcat |
204 |
Q |
| |
|
|||||||||||||| || || ||||| |||||||||||||| ||||| || ||||| | || |||||||| || || | || |||||| || | ||| |
|
|
| T |
59177 |
ggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccat |
59276 |
T |
|
| Q |
205 |
ggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtcttctcaacagctgagcta |
304 |
Q |
| |
|
|||||| ||| | || || ||||| || | || | ||||| || || ||||| || ||||||||||| | ||||||| ||||||| || || ||||| |
|
|
| T |
59277 |
ggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctcttctccactgcagagctg |
59376 |
T |
|
| Q |
305 |
gtctt |
309 |
Q |
| |
|
||||| |
|
|
| T |
59377 |
gtctt |
59381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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