View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_49 (Length: 328)
Name: NF9444_low_49
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 8647379 - 8647085
Alignment:
| Q |
13 |
tttggtgttaatttatctaatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggat |
112 |
Q |
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| T |
8647379 |
tttggtgttaatttatctaatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggat |
8647280 |
T |
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| Q |
113 |
agccatatgattattaaattaaatgtgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactag |
212 |
Q |
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| T |
8647279 |
agccatatgattattaaattaaatgtgaatttcatgagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactag |
8647180 |
T |
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| Q |
213 |
ttatctttatcttccattcttatttgtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactg |
307 |
Q |
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| T |
8647179 |
ttatctttatcttccattcttatttgtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactg |
8647085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 30607205 - 30607412
Alignment:
| Q |
30 |
taatttatttagtacatagtcaattttattggtccatgattcgaagtttaaaaacatttggatatgaacatacccttctggatagccatatgattattaa |
129 |
Q |
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| T |
30607205 |
taatttgtttagtacatagtcaattttattggtccatgactcgaagtttaaaaacatttggatatgaacat-ccctttttgatagccatttgattattaa |
30607303 |
T |
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| Q |
130 |
attaaatgtgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccat |
229 |
Q |
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| T |
30607304 |
attaaatgtgaatttcatgagatgaattggaaaatattattaatggtacttaattattgataagtatgtcattctatgactagttatctttatcttccat |
30607403 |
T |
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| Q |
230 |
tcttatttg |
238 |
Q |
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||||||||| |
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| T |
30607404 |
tcttatttg |
30607412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 29862919 - 29862985
Alignment:
| Q |
238 |
gtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaa |
304 |
Q |
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| T |
29862919 |
gtgttgttacttgctagtaatagtgtgatgttattgagatgattggttgttaggcaataggtgttaa |
29862985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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