View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_52 (Length: 328)

Name: NF9444_low_52
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_52
NF9444_low_52
[»] chr5 (2 HSPs)
chr5 (11-105)||(1951851-1951945)
chr5 (235-311)||(1951772-1951848)
[»] chr4 (1 HSPs)
chr4 (30-73)||(13320567-13320610)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 1951945 - 1951851
Alignment:
Q  11 agcagagagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1951945 agcagacagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat 1951851  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 1951848 - 1951772
Alignment:
Q  235 ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattcct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1951848 ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattcct 1951772  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 13320610 - 13320567
Alignment:
Q  30 aagttatctgcttgaaaagcatctctactctctattgctgggag 73  Q
    ||||||||||| || ||||||||||| |||||||||||||||||    
T  13320610 aagttatctgcctggaaagcatctctcctctctattgctgggag 13320567  T

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