View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_54 (Length: 327)
Name: NF9444_low_54
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 31188930 - 31188614
Alignment:
| Q |
1 |
gtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaa |
100 |
Q |
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| T |
31188930 |
gtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaa |
31188831 |
T |
|
| Q |
101 |
tgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattttaacttgtctactatt |
199 |
Q |
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| T |
31188830 |
tgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtgatctaatattttaacttgtctactatt |
31188731 |
T |
|
| Q |
200 |
atatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188730 |
atatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttttgtgctt |
31188631 |
T |
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| Q |
300 |
catgtttctgtgctcct |
316 |
Q |
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|||||||||||| |||| |
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| T |
31188630 |
catgtttctgtgttcct |
31188614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 31200737 - 31200445
Alignment:
| Q |
1 |
gtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtcataaccttaatatgtgtaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
31200737 |
gtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtcatatccttaatatgtgtaa |
31200638 |
T |
|
| Q |
101 |
tgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattttaacttgtctactatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31200637 |
tgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtgatctaatattttaacttgtctactatt |
31200538 |
T |
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| Q |
200 |
atatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
292 |
Q |
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| T |
31200537 |
atatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgcatattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
2 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
76 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||| |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 31144826 - 31144770
Alignment:
| Q |
2 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagta |
59 |
Q |
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|||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||||| |
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| T |
31144826 |
tatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagta |
31144770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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