View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_56 (Length: 324)

Name: NF9444_low_56
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_56
NF9444_low_56
[»] chr1 (1 HSPs)
chr1 (1-301)||(52629444-52629739)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 52629739 - 52629444
Alignment:
Q  1 tattaatagctatgtcaccggcaaaagttaatttgaatcggcgaaatgtcccatcactaatttgcacacttgattgctaatataagttttacaaaaatca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  52629739 tattaatagctatgtcaccggcaaaagtaaatttgaatcggcgaaatgtcacatcactaatttgcacacttgattcctaata--agttttacaaaaatca 52629642  T
Q  101 aagcataactataagtattatatattactattatatnnnnnnnncaaatacaaatatagttgaaatgacaatgtatattagaatgtaaatttaaatgcgt 200  Q
    || |||||||||||||||||||||||| ||| ||||         ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  52629641 aaacataactataagtattatatattattat-atataaaaaaaa-aaatacaaatataattgaaatggcaatatatattagaatgtaaatttaaatgcgt 52629544  T
Q  201 acctttgcaattttaacaccatattgttggtctatattggatttgctcgaaagtaatcttactcgatccattctgcaaaagattggatggttaaatagat 300  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52629543 acctttgcaattc-aacaccatattgttggtttatattggatttgctcgaaagtaatcttactcgatccactctgcaaaagattggatggttaaatagat 52629445  T

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