View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_61 (Length: 315)
Name: NF9444_low_61
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 24422844 - 24422535
Alignment:
| Q |
1 |
actttgaagttaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggccaaagattctactaggataggattgaaagttgaaactat |
100 |
Q |
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| T |
24422844 |
actttgaagttaatctcaacaccagatgtggtccaactgaataaagttgttgcttttaggccaaagattctactaggataggattgaaagttgaaactat |
24422745 |
T |
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| Q |
101 |
cttcaattacagcataagacaactttgatttataaatgtgatcaacataggttggtctgctttcaattcaatggtcggaaaaatttatgattttgaacca |
200 |
Q |
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| T |
24422744 |
cttcaattacagcataagacaactttgatttataaatgtgatcaacataggttggtctgctttcaattcaatggtcggaaaaatttatgattttgaacca |
24422645 |
T |
|
| Q |
201 |
actctttcaaagatactgaatctctccattgttttttactctttctaatataaagtaagattcaaaataataatagagttaatnnnnnnnttccacggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
24422644 |
cctctttcaaagatactgaatctctccattgttttttactctttctaatataatgtaagattcaaaataataatagagttaataaaaaaattccacggtg |
24422545 |
T |
|
| Q |
301 |
aacacgaaac |
310 |
Q |
| |
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|||| ||||| |
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| T |
24422544 |
aacatgaaac |
24422535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 75 - 277
Target Start/End: Original strand, 24411352 - 24411554
Alignment:
| Q |
75 |
aggataggattgaaagttgaaactatcttcaattacagcataagacaactttgatttataaatgtgatcaacataggttggtctgctttcaattcaatgg |
174 |
Q |
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|||||||| |||||||||||| |||||||| || |||||||||||||||||||||| | |||| ||||| || |||||||||||||||||||||||||| |
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| T |
24411352 |
aggataggtttgaaagttgaagctatcttccat-acagcataagacaactttgattgaaaaatatgatctgcaaaggttggtctgctttcaattcaatgg |
24411450 |
T |
|
| Q |
175 |
tcggaaaaatttatgattttgaaccaactctttcaaagatactgaatctctcca-ttgttttttactctttctaatataaagtaagattcaaaataataa |
273 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24411451 |
tcagaaaaatttatgattttgaaccacttctttcaaagatactgaatctctcaattttttttttactctttctaatatgaagtaagattcaaaataataa |
24411550 |
T |
|
| Q |
274 |
taga |
277 |
Q |
| |
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|||| |
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| T |
24411551 |
taga |
24411554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24411201 - 24411261
Alignment:
| Q |
1 |
actttgaagttaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggc |
61 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24411201 |
actttgaaggtaatctcaacaccagatgtggcccaactgaataaagttgttgcttttaggc |
24411261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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