View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_62 (Length: 312)
Name: NF9444_low_62
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 51875551 - 51875265
Alignment:
| Q |
12 |
cacatacaacatgagaatagcacaagatccttgggctgcaagtaacccaaaccaaagcccaacaaaacccatcttcacaacaaacccaagaacaatagcc |
111 |
Q |
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| T |
51875551 |
cacatacaacatgagaatagcacaagagccttgggctgcaagtaacccaaaccaaagcccaacaaaacccatcttcacaacaaacccaagaacaatagcc |
51875452 |
T |
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| Q |
112 |
acaggcatacctaccaaataaaaagaccccaaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51875451 |
acaggcatacctaccaaataaaaagaccccaaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggc |
51875352 |
T |
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| Q |
212 |
aattcccaatctcacaaagcccaacaattggcaaagccatagccgttagattaataatctcgtcatcactagtaaacaatctccccc |
298 |
Q |
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| T |
51875351 |
aattcccaatctcacaaagcccaacaattggcaaagccatagccgttagattaataatctcgtcatcactagtaaacaatctccccc |
51875265 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 45845425 - 45845516
Alignment:
| Q |
142 |
aaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagccc |
233 |
Q |
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|||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| ||||| |
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| T |
45845425 |
aaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccc |
45845516 |
T |
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