View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_64 (Length: 309)
Name: NF9444_low_64
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_64 |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0158 (4 HSPs) |
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| [»] scaffold0035 (4 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 186340 - 186458
Alignment:
| Q |
1 |
gaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttccttttcattcacagtttgttaca |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
186340 |
gaggaagagctgaggagagaagcttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttccttttcattcacagtttgataca |
186439 |
T |
|
| Q |
101 |
atcgtactgtttcatttca |
119 |
Q |
| |
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|||||||||||| |||||| |
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| T |
186440 |
atcgtactgttttatttca |
186458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 186487 - 186574
Alignment:
| Q |
157 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
244 |
Q |
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|||||||||||||| | |||||||||||| |||||||||| ||| ||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
186487 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttc |
186574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 36313 - 36196
Alignment:
| Q |
157 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
256 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
36313 |
ccaaattcagtcattgttgttctaattccaaaataagctgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
36214 |
T |
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| Q |
257 |
tgttgtggttctctgttg |
274 |
Q |
| |
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|||||| ||||||||||| |
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| T |
36213 |
tgttgttgttctctgttg |
36196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 36469 - 36351
Alignment:
| Q |
1 |
gaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttccttttcattcacagtttgttaca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
36469 |
gaggaagagctgcggagagaagtttttaggcaagcattagaaattcataactgattgtaatcctaagtttcagtttccttttcattcacagtacgataca |
36370 |
T |
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| Q |
101 |
atcgtactgtttcatttca |
119 |
Q |
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|||||||||||| |||||| |
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| T |
36369 |
atcgtactgttttatttca |
36351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 28591 - 28474
Alignment:
| Q |
157 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
256 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
28591 |
ccaaattcagtcattgttgttctaattccaaaataagttgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
28492 |
T |
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| Q |
257 |
tgttgtggttctctgttg |
274 |
Q |
| |
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|| ||| ||||||||||| |
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| T |
28491 |
tgctgttgttctctgttg |
28474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 28746 - 28629
Alignment:
| Q |
1 |
gaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttccttttcattcacagtttgttaca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
28746 |
gaggaagagctgcggagagaagtttttaggcaagctttagaaatgcataactgattgtaatcctaagtttcagtttccttttcatttacagttt-ataca |
28648 |
T |
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| Q |
101 |
atcgtactgtttcatttca |
119 |
Q |
| |
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|||||||||||| |||||| |
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| T |
28647 |
atcgtactgttttatttca |
28629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 97613 - 97509
Alignment:
| Q |
17 |
gagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttca--gtttccttttcattcacagtttgttacaatcgtactgtttca |
114 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | |
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| T |
97613 |
gagaagtttttaggcaagcattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtactatttta |
97514 |
T |
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| Q |
115 |
tttca |
119 |
Q |
| |
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||||| |
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| T |
97513 |
tttca |
97509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 87920 - 87816
Alignment:
| Q |
17 |
gagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttca--gtttccttttcattcacagtttgttacaatcgtactgtttca |
114 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | |
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| T |
87920 |
gagaagtttttaggcaaacattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtactatttta |
87821 |
T |
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| Q |
115 |
tttca |
119 |
Q |
| |
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||||| |
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| T |
87820 |
tttca |
87816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 87780 - 87700
Alignment:
| Q |
164 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
244 |
Q |
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||||||| | |||||||||||| || ||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
87780 |
cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
87700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 97473 - 97393
Alignment:
| Q |
164 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
244 |
Q |
| |
|
||||||| | |||||||||||| || ||||||| || ||||||||||||||| |||||||||| |||||||| ||||||| |
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|
| T |
97473 |
cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
97393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 18477774 - 18477697
Alignment:
| Q |
13 |
aggagagaagttttt--agacaagcattagaaattcatagccgattgtaatcctaagtttc-agtttccttttcattc |
87 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
18477774 |
aggagagaagtttttttaggcaagcattagaaattcatagcttattgtaatcctaagtttcaagtttccttttcattc |
18477697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 18487870 - 18487793
Alignment:
| Q |
13 |
aggagagaagttttt--agacaagcattagaaattcatagccgattgtaatcctaagtttc-agtttccttttcattc |
87 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
18487870 |
aggagagaagtttttttaggcaagcattagaaattcatagcatattgtaatcctaagtttcaagtttccttttcattc |
18487793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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