View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_65 (Length: 309)
Name: NF9444_low_65
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 80 - 302
Target Start/End: Complemental strand, 41572279 - 41572057
Alignment:
| Q |
80 |
atctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
179 |
Q |
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| T |
41572279 |
atctgagccctttgtaattctgtttgttatctagccgcgggttttcgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
41572180 |
T |
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| Q |
180 |
tataatattaaatccaccattttgcccttcaaatcaataccgctgagacattttggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaa |
279 |
Q |
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| T |
41572179 |
tataatattaaatccaccattttgcccttcaaatcaataccgctaagacagtttggtactcaaatttactaagtgagttctatgcttgaaaccgcgggaa |
41572080 |
T |
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| Q |
280 |
gcaacaaatgttaacttctcatt |
302 |
Q |
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| T |
41572079 |
gcaacaaatgttaacttctcatt |
41572057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 41584583 - 41584470
Alignment:
| Q |
186 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattttggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaagcaaca |
285 |
Q |
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| T |
41584583 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattttcgtactcaaattaaaaaa---aggcctatgtttgaaaccgcgggaagcaaca |
41584487 |
T |
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| Q |
286 |
aatgttaacttctcatt |
302 |
Q |
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| T |
41584486 |
aatattaacttctcatt |
41584470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 27754232 - 27754330
Alignment:
| Q |
80 |
atctgagccctttgtaattctgtttgttatctagccgcg-ggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaa |
178 |
Q |
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|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||| |
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| T |
27754232 |
atctgagccctttgtaattctgtttgttttctagccgcgagttttttgtgtgcttcttgcacacacttgtc--gtgaataaaatttgccgtttctaaaaa |
27754329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 21941778 - 21941680
Alignment:
| Q |
81 |
tctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaat |
180 |
Q |
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| T |
21941778 |
tctgagccctctgtaattctgtttgtt-tatgcccgcgagttttagtgtgtttcttgcacaaactcgt--agtgaataaatttagccgtttctaaaaaat |
21941682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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