View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_68 (Length: 306)
Name: NF9444_low_68
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 6010189 - 6010469
Alignment:
| Q |
8 |
atggtgttcactcctcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttataccaaaacaacaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6010189 |
atggtgttcactcctcacagacattgttctttcccctcgtaatatatcctcaaattctcaataccaacaattagactcaacttttataccaaaacaacaa |
6010288 |
T |
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| Q |
108 |
caatgtgcgcttctcacaataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaagcgatagagttc |
207 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6010289 |
caatgtgcgcttctcgctataatccttcgttatatgctataacaatcaaatcctgaataacctcgagacagagttcaaatcaatccaagcgatagagttc |
6010388 |
T |
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| Q |
208 |
aaattccacctggacaggtaaaatgatcattagtgtcacagttattaataatgatgatgatcaaatccagaataacgaaac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
6010389 |
aaattccacctggacaggtaaaatgatcattagtgtcacagttattaataatgatgataatcaaatcctgaataacgaaac |
6010469 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 19471615 - 19471712
Alignment:
| Q |
8 |
atggtgttcactcctcacagacattgttctttcccctcctaatatatcctcaaattctcaataccaacaattagactcaacttttataccaaaacaacaa |
107 |
Q |
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|||| |||||||||| |||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||| |||| |
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| T |
19471615 |
atggcgttcactcctagcagacactgttctttgccctcctaaa-----ctcaaattctcaatactaacaactagacttgacttttataccaaaacgacaa |
19471709 |
T |
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