View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_69 (Length: 306)
Name: NF9444_low_69
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 39952048 - 39952229
Alignment:
| Q |
118 |
tctctagtctagtaactgatgagtgactattctattctattggcatttagctcgaggatataggtactgtcaatatcaaacacacgtgtcacaacatcac |
217 |
Q |
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| T |
39952048 |
tctctattctagtaactgatgaatgactattctattctattggcatttagctcgaggatataggtactgtcaatatcaaacacacgtgtcacaacatcac |
39952147 |
T |
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| Q |
218 |
aggttgagccctctcaaataaaacaaacacattcaaaaccaaacagaaactgcacttctacttgttctaccgctctctgctt |
299 |
Q |
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| T |
39952148 |
aggttgagccctctcaaataaaacaaacacattcaaaaccaaacagaaactgcacttctacttgttctaccgctctctgctt |
39952229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 39951895 - 39952001
Alignment:
| Q |
19 |
aatcaccatattaagccgcattattctactataaatcaatactaatcccattccacaaaacatgcattttttccctcctttagaatttgaaacctttgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951895 |
aatcaccatattaagccgcattattctactataaatcaatactaatcccattccacaaaacatgcattttttccctcctttagaatttgaaacctttgtt |
39951994 |
T |
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| Q |
119 |
ctctagt |
125 |
Q |
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| T |
39951995 |
ctgtagt |
39952001 |
T |
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