View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_7 (Length: 612)
Name: NF9444_low_7
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Original strand, 1094713 - 1095312
Alignment:
| Q |
1 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
100 |
Q |
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| T |
1094713 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
1094812 |
T |
|
| Q |
101 |
accattgctcattggatcagtagtatcatgattcatgagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaa |
200 |
Q |
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| T |
1094813 |
accattgctcattggatcagtagtatcat-------gagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaa |
1094905 |
T |
|
| Q |
201 |
aggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttatcaagtaaatatggggtggatgg |
300 |
Q |
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| T |
1094906 |
aggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttaacaagtaaatatggggtggatgg |
1095005 |
T |
|
| Q |
301 |
ggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttgattttctaaccgcatg |
400 |
Q |
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| T |
1095006 |
ggttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttggttttctaaccgcatg |
1095105 |
T |
|
| Q |
401 |
ccaaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttttatggataaactcaagcaatctttttagttta |
500 |
Q |
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| T |
1095106 |
ccaaaagtagttggaaatggtatatatactttattttggtttgatttgtgggtgatcagagaaatttttatggat--actcaagcaatctttttagttta |
1095203 |
T |
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| Q |
501 |
tttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
594 |
Q |
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| T |
1095204 |
tttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggctacatggaccggaggttgcataaaaatattttcatttgg |
1095303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 157 - 603
Target Start/End: Original strand, 1116295 - 1116749
Alignment:
| Q |
157 |
aatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatgg |
256 |
Q |
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||||| ||||||| ||||||||||| | ||||||| ||| |||||||| ||||||| |||||||||||||||| ||| || ||||||| | ||||||| | |
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| T |
1116295 |
aattttggttttagttgatgcttgccttcttaattgggtcccaaaggtgaatattgattttgttggagaagtggtgttggtgaatgagcgatgtgaatag |
1116394 |
T |
|
| Q |
257 |
agtttatggtttaaatttttatcaagtaaatatggggtgga-tggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagt |
355 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||| ||| | |||||||||| | | |||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
1116395 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
1116494 |
T |
|
| Q |
356 |
acagatagtggtggt---gttcctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtggg |
452 |
Q |
| |
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| T |
1116495 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaatggtatagatactttattttggtttgatttgtggg |
1116594 |
T |
|
| Q |
453 |
tgatcagagaaatttttatggataaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtgga |
552 |
Q |
| |
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|| | |||||| |||||||||||||| || ||||||||||||| ||| |||||||||||||||| | |||||| |||||| |||||| |||||||| |
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| T |
1116595 |
tggttggagaaacatttatggataaacttaaccaatctttttagtatatctatcaattaataaacaggtgtttgtgaaagataagttgaa--tgagtgga |
1116692 |
T |
|
| Q |
553 |
ggtttag------gcgaccggaggttgcataaaaatattttcatttgggagaataat |
603 |
Q |
| |
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|||| || ||| ||||| ||||||||||||||||| |||||||| ||||| |
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| T |
1116693 |
ggttcagatgacttggactggaggctgcataaaaatattttcctttgggaggataat |
1116749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 150 - 370
Target Start/End: Original strand, 1097869 - 1098087
Alignment:
| Q |
150 |
agtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtg |
249 |
Q |
| |
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|||||| ||||| || || |||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| || | |
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| T |
1097869 |
agtagacaattttggcttaaatttatacttgcttgcttaattgggttccaaaggtaaatattgctttt-ttggagaagtggtgttggaggata-----ta |
1097962 |
T |
|
| Q |
250 |
tgaatggagtttatggtttaaatttttatcaagtaaatatggggtgg---atggggttttttatagggtgtaatctagattcatctt-gttggaaaaact |
345 |
Q |
| |
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||||| ||||||| ||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| || ||||||||| |
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| T |
1097963 |
tgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggtgtaatctagatttatcttggtgggaaaaact |
1098062 |
T |
|
| Q |
346 |
aatgttgagtacagatagtggtggt |
370 |
Q |
| |
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||||||||||| |||| |||||||| |
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| T |
1098063 |
aatgttgagtaaagatggtggtggt |
1098087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1090979 - 1091076
Alignment:
| Q |
1 |
ggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactcaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |
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| T |
1090979 |
ggattgaatgtttggtttttcttcttctttctgtaacgttctggcaatggagatttaaggagaca---aatagtggtacttgattgtcattatactcaca |
1091075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 509 - 564
Target Start/End: Original strand, 1098162 - 1098216
Alignment:
| Q |
509 |
ttaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggcgac |
564 |
Q |
| |
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| T |
1098162 |
ttaataaacaggcatttgtggaagatatgttgaatgtga-tggaggtttaggcgac |
1098216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 523 - 594
Target Start/End: Original strand, 1121176 - 1121253
Alignment:
| Q |
523 |
tttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||| |
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| T |
1121176 |
tttgtggaagatatgttgaatgtgagtggaggtttaggcgacatggactggaggatgcataaaaatattttcctttgg |
1121253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 558
Target Start/End: Original strand, 8115592 - 8115646
Alignment:
| Q |
504 |
atcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggttta |
558 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
8115592 |
atcaattaataaacaggtgtttgtggaagatatgttgaatgtgagtggaggttta |
8115646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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