View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_70 (Length: 305)

Name: NF9444_low_70
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_70
NF9444_low_70
[»] chr8 (5 HSPs)
chr8 (142-254)||(12587017-12587129)
chr8 (1-78)||(12587193-12587270)
chr8 (1-78)||(27323205-27323282)
chr8 (254-291)||(12585648-12585685)
chr8 (257-293)||(26571606-26571642)
[»] chr7 (3 HSPs)
chr7 (142-254)||(22970498-22970610)
chr7 (6-78)||(22970362-22970434)
chr7 (254-291)||(22972972-22973009)
[»] chr1 (2 HSPs)
chr1 (142-254)||(21880015-21880127)
chr1 (1-78)||(21880191-21880268)
[»] chr6 (3 HSPs)
chr6 (142-254)||(6901213-6901325)
chr6 (1-78)||(6901072-6901149)
chr6 (254-291)||(6901667-6901704)
[»] chr3 (2 HSPs)
chr3 (142-254)||(49602567-49602679)
chr3 (2-78)||(49602743-49602819)
[»] chr2 (1 HSPs)
chr2 (1-76)||(22329701-22329775)
[»] chr5 (1 HSPs)
chr5 (3-73)||(35360367-35360436)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 12587129 - 12587017
Alignment:
Q  142 actcatgagtagtgtttataggatagttataacttattaaaaaagtagtgtttttagaattataaattgattctgctctgatcaataaacttgtaatttg 241  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12587129 actcatgagtagtgtttatagggtagttataacttataaaaaaagtagtgtttttagaattataaattgattctgctctgatcaatatacttgtaatttg 12587030  T
Q  242 tagcagtaaacat 254  Q
    |||||||||||||    
T  12587029 tagcagtaaacat 12587017  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12587270 - 12587193
Alignment:
Q  1 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12587270 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattgc 12587193  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27323282 - 27323205
Alignment:
Q  1 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    ||||||||||||||||||||||| || |||||||||  |||||||||| |||||| |||||| ||| |||||||||||    
T  27323282 taaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaactttgctgttattttattgc 27323205  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 12585685 - 12585648
Alignment:
Q  254 tccaaaatatgacaagtcgtagaggacaattgtaattg 291  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12585685 tccaaaatatgacaagtcgtagaggacaattgtaattg 12585648  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 26571642 - 26571606
Alignment:
Q  257 aaaatatgacaagtcgtagaggacaattgtaattgat 293  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  26571642 aaaaaatgacaagtcgtataggacaattgtaattgat 26571606  T

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Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 22970498 - 22970610
Alignment:
Q  142 actcatgagtagtgtttataggatagttataacttattaaaaaagtagtgtttttagaattataaattgattctgctctgatcaataaacttgtaatttg 241  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22970498 actcatgagtagtgtttatagggtagttataacttataaaaaaagtagtgtttttagaattataaattgattctgctctgatcaatatacttgtaatttg 22970597  T
Q  242 tagcagtaaacat 254  Q
    |||||||||||||    
T  22970598 tagcagtaaacat 22970610  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 22970362 - 22970434
Alignment:
Q  6 tttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22970362 tttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactactattttattgc 22970434  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 22972972 - 22973009
Alignment:
Q  254 tccaaaatatgacaagtcgtagaggacaattgtaattg 291  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22972972 tccaaaatatgacaagtcgtagaggacaattgtaattg 22973009  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 21880127 - 21880015
Alignment:
Q  142 actcatgagtagtgtttataggatagttataacttattaaaaaagtagtgtttttagaattataaattgattctgctctgatcaataaacttgtaatttg 241  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21880127 actcatgagtagtgtttatagggtagttataacttataaaaaaagtagtgtttttagaattataaattgattctgctctgatcaatatacttgtaatttg 21880028  T
Q  242 tagcagtaaacat 254  Q
    |||||||||||||    
T  21880027 tagcagtaaacat 21880015  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 21880268 - 21880191
Alignment:
Q  1 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  21880268 taaaatttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactttactactattttattgc 21880191  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 6901213 - 6901325
Alignment:
Q  142 actcatgagtagtgtttataggatagttataacttattaaaaaagtagtgtttttagaattataaattgattctgctctgatcaataaacttgtaatttg 241  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6901213 actcatgagtagtgtttatagggtagttataacttataaaaaaactagtgtttttagaattataaattgattatgctctgatcaataaacttgtaatttg 6901312  T
Q  242 tagcagtaaacat 254  Q
    |||||||||||||    
T  6901313 tagcagtaaacat 6901325  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6901072 - 6901149
Alignment:
Q  1 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  6901072 taaactttattgttagggtttgataagtgattatttaggattattcaacaatattaaactttactactattttattgc 6901149  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 6901667 - 6901704
Alignment:
Q  254 tccaaaatatgacaagtcgtagaggacaattgtaattg 291  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6901667 tccaaaatatgacaagtcgtagaggacaattgtaattg 6901704  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 49602679 - 49602567
Alignment:
Q  142 actcatgagtagtgtttataggatagttataacttattaaaaaagtagtgtttttagaattataaattgattctgctctgatcaataaacttgtaatttg 241  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  49602679 actcatgagtagtgtttatagggtagttataacttataaaaaaagtagtgtttttagaattataaattgattctgctatgatcaataaacttgtaacttg 49602580  T
Q  242 tagcagtaaacat 254  Q
    |||||||||||||    
T  49602579 tagcagtaaacat 49602567  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 49602819 - 49602743
Alignment:
Q  2 aaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttattgc 78  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  49602819 aaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaactctactactattttattgc 49602743  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22329775 - 22329701
Alignment:
Q  1 taaactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctattttatt 76  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  |||||||| || ||| |||||||||||||    
T  22329775 taaactttattgttagggtttgataagtgattatttgggattatt-tacaatcttgaattttgctgctattttatt 22329701  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 35360436 - 35360367
Alignment:
Q  3 aactttattgttagggtttgataagtgattatttgagattattcaacaatcttaaactttactgctatttt 73  Q
    ||||||||||||||||||| ||| ||| |||||||  ||||||||||||| ||||||||| ||| ||||||    
T  35360436 aactttattgttagggtttaata-gtgtttatttggaattattcaacaattttaaactttgctgttatttt 35360367  T

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