View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_71 (Length: 302)

Name: NF9444_low_71
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_71
NF9444_low_71
[»] chr4 (25 HSPs)
chr4 (8-284)||(402818-403092)
chr4 (159-275)||(41336657-41336772)
chr4 (159-274)||(50681148-50681263)
chr4 (10-106)||(403202-403297)
chr4 (159-254)||(403422-403518)
chr4 (134-254)||(43505829-43505947)
chr4 (133-205)||(18814962-18815033)
chr4 (129-191)||(27025-27087)
chr4 (140-206)||(15173427-15173493)
chr4 (150-204)||(35571951-35572005)
chr4 (134-204)||(50662851-50662921)
chr4 (159-204)||(21731772-21731817)
chr4 (160-204)||(55084593-55084637)
chr4 (159-201)||(679160-679202)
chr4 (174-204)||(22030115-22030145)
chr4 (134-204)||(44863081-44863151)
chr4 (161-203)||(49004090-49004132)
chr4 (186-275)||(54425968-54426055)
chr4 (164-205)||(7839490-7839531)
chr4 (159-204)||(23277319-23277364)
chr4 (190-275)||(31076444-31076529)
chr4 (186-275)||(54069475-54069564)
chr4 (136-204)||(3155486-3155554)
chr4 (136-204)||(22539166-22539234)
chr4 (159-206)||(40831162-40831212)
[»] chr8 (24 HSPs)
chr8 (134-255)||(14956373-14956494)
chr8 (159-204)||(40859837-40859882)
chr8 (152-238)||(38353239-38353324)
chr8 (175-275)||(38750270-38750370)
chr8 (133-205)||(1058202-1058274)
chr8 (129-205)||(36963473-36963549)
chr8 (137-204)||(9130439-9130506)
chr8 (164-206)||(41821458-41821500)
chr8 (159-274)||(15180437-15180552)
chr8 (160-202)||(15179049-15179091)
chr8 (159-204)||(2833449-2833494)
chr8 (159-204)||(2840265-2840310)
chr8 (159-204)||(2844952-2844997)
chr8 (159-204)||(26215402-26215447)
chr8 (133-189)||(40981000-40981056)
chr8 (214-272)||(16736035-16736093)
chr8 (129-187)||(29819026-29819084)
chr8 (175-205)||(31916537-31916567)
chr8 (189-259)||(35644055-35644125)
chr8 (159-204)||(10114396-10114441)
chr8 (135-204)||(29168181-29168250)
chr8 (133-258)||(35534686-35534809)
chr8 (175-204)||(37444534-37444563)
chr8 (150-203)||(40637423-40637476)
[»] chr3 (31 HSPs)
chr3 (134-275)||(30956684-30956825)
chr3 (134-275)||(30972496-30972637)
chr3 (161-275)||(20170421-20170535)
chr3 (135-206)||(1508708-1508779)
chr3 (133-206)||(31365399-31365472)
chr3 (134-274)||(35959515-35959655)
chr3 (150-204)||(402660-402714)
chr3 (161-275)||(12862306-12862419)
chr3 (133-271)||(24684885-24685023)
chr3 (129-206)||(944359-944438)
chr3 (127-261)||(20880341-20880474)
chr3 (150-203)||(12833881-12833934)
chr3 (133-202)||(29002961-29003030)
chr3 (150-275)||(39980616-39980741)
chr3 (134-198)||(35328288-35328351)
chr3 (163-275)||(36631109-36631221)
chr3 (133-204)||(31403238-31403309)
chr3 (179-254)||(35696176-35696251)
chr3 (184-254)||(51929439-51929510)
chr3 (186-275)||(18405889-18405979)
chr3 (160-202)||(23815960-23816002)
chr3 (150-204)||(28240223-28240277)
chr3 (159-189)||(30443660-30443690)
chr3 (134-204)||(34235195-34235265)
chr3 (175-253)||(46778307-46778385)
chr3 (138-204)||(47249587-47249653)
chr3 (213-275)||(49034321-49034383)
chr3 (159-195)||(5435738-5435774)
chr3 (137-189)||(25447378-25447430)
chr3 (176-204)||(30574031-30574059)
chr3 (133-185)||(46886835-46886887)
[»] chr6 (16 HSPs)
chr6 (128-275)||(6538382-6538524)
chr6 (150-275)||(18076083-18076208)
chr6 (150-205)||(34430603-34430658)
chr6 (133-204)||(264251-264322)
chr6 (163-206)||(29754206-29754249)
chr6 (133-275)||(24626165-24626307)
chr6 (133-196)||(32014097-32014160)
chr6 (133-204)||(35069432-35069503)
chr6 (160-202)||(10401139-10401181)
chr6 (159-205)||(30926434-30926480)
chr6 (160-198)||(34882526-34882564)
chr6 (129-202)||(19411614-19411687)
chr6 (160-201)||(23063650-23063691)
chr6 (175-260)||(30536390-30536475)
chr6 (164-204)||(12628276-12628316)
chr6 (190-254)||(30536637-30536701)
[»] chr1 (43 HSPs)
chr1 (133-204)||(5894282-5894353)
chr1 (169-275)||(14385821-14385927)
chr1 (133-204)||(47498962-47499033)
chr1 (138-275)||(42391241-42391377)
chr1 (126-202)||(5741525-5741601)
chr1 (135-275)||(33541766-33541906)
chr1 (159-253)||(18556823-18556917)
chr1 (133-202)||(41195325-41195394)
chr1 (126-202)||(5720844-5720920)
chr1 (135-202)||(27146369-27146436)
chr1 (126-275)||(33546511-33546657)
chr1 (133-275)||(1510368-1510509)
chr1 (159-205)||(24552468-24552514)
chr1 (133-205)||(37473269-37473341)
chr1 (160-203)||(3234153-3234196)
chr1 (133-204)||(14331659-14331730)
chr1 (134-205)||(51688576-51688647)
chr1 (159-261)||(14576725-14576827)
chr1 (159-204)||(38116304-38116349)
chr1 (228-272)||(5063428-5063472)
chr1 (132-184)||(24562452-24562504)
chr1 (133-201)||(45975570-45975638)
chr1 (133-204)||(9572227-9572298)
chr1 (135-202)||(30191863-30191930)
chr1 (134-189)||(30581683-30581738)
chr1 (210-261)||(33835582-33835633)
chr1 (210-261)||(33914136-33914187)
chr1 (133-204)||(38247324-38247394)
chr1 (133-196)||(41505557-41505620)
chr1 (214-261)||(45145177-45145224)
chr1 (210-257)||(45661185-45661232)
chr1 (161-191)||(6556916-6556946)
chr1 (159-205)||(11137800-11137846)
chr1 (170-204)||(15942250-15942284)
chr1 (159-189)||(27976376-27976406)
chr1 (136-238)||(29904633-29904734)
chr1 (242-275)||(6556950-6556983)
chr1 (214-275)||(24915109-24915170)
chr1 (159-204)||(33186172-33186217)
chr1 (129-197)||(473032-473100)
chr1 (153-205)||(17834150-17834202)
chr1 (133-193)||(27820470-27820530)
chr1 (183-275)||(37517252-37517344)
[»] chr7 (28 HSPs)
chr7 (132-233)||(21568728-21568829)
chr7 (132-275)||(38138537-38138680)
chr7 (133-260)||(46078017-46078144)
chr7 (167-275)||(19302617-19302725)
chr7 (128-200)||(38500051-38500123)
chr7 (133-204)||(33672958-33673029)
chr7 (129-202)||(3308383-3308456)
chr7 (159-275)||(45806535-45806651)
chr7 (133-206)||(9210498-9210571)
chr7 (242-275)||(15309623-15309656)
chr7 (128-205)||(33128622-33128699)
chr7 (134-195)||(33678663-33678724)
chr7 (128-205)||(45263958-45264035)
chr7 (210-275)||(45338396-45338461)
chr7 (186-274)||(420283-420371)
chr7 (215-275)||(20234435-20234495)
chr7 (133-205)||(46280387-46280459)
chr7 (136-275)||(4970851-4970985)
chr7 (133-205)||(5947031-5947099)
chr7 (137-204)||(33552940-33553007)
chr7 (134-201)||(47795838-47795905)
chr7 (176-206)||(8704509-8704539)
chr7 (133-187)||(27863843-27863897)
chr7 (242-275)||(17944401-17944434)
chr7 (214-275)||(20269527-20269588)
chr7 (134-202)||(18865181-18865249)
chr7 (176-204)||(32714345-32714373)
chr7 (184-275)||(48140137-48140226)
[»] chr5 (33 HSPs)
chr5 (134-275)||(25460963-25461103)
chr5 (175-275)||(16458037-16458136)
chr5 (150-204)||(39105361-39105415)
chr5 (159-205)||(42646551-42646597)
chr5 (137-201)||(19460508-19460572)
chr5 (133-249)||(25461840-25461955)
chr5 (133-204)||(9202867-9202938)
chr5 (136-204)||(1465138-1465206)
chr5 (133-205)||(3735619-3735691)
chr5 (134-262)||(10639825-10639952)
chr5 (179-275)||(25461705-25461800)
chr5 (159-274)||(31051794-31051904)
chr5 (159-205)||(7319139-7319185)
chr5 (184-238)||(7999127-7999181)
chr5 (176-274)||(29925754-29925852)
chr5 (134-200)||(32372495-32372561)
chr5 (132-204)||(28776854-28776926)
chr5 (133-204)||(42573898-42573970)
chr5 (150-201)||(12425468-12425519)
chr5 (228-275)||(16937941-16937988)
chr5 (159-270)||(34669790-34669901)
chr5 (134-201)||(40848638-40848705)
chr5 (150-204)||(7984875-7984929)
chr5 (134-188)||(24030547-24030601)
chr5 (189-259)||(36227721-36227791)
chr5 (148-185)||(3569097-3569134)
chr5 (159-204)||(10771997-10772042)
chr5 (122-199)||(16938001-16938078)
chr5 (159-204)||(20982254-20982298)
chr5 (133-206)||(32941341-32941413)
chr5 (136-205)||(36797204-36797273)
chr5 (159-204)||(42582818-42582863)
chr5 (133-197)||(42100199-42100263)
[»] chr2 (27 HSPs)
chr2 (133-205)||(41407171-41407243)
chr2 (133-275)||(39659567-39659708)
chr2 (160-249)||(26201925-26202015)
chr2 (133-197)||(1633682-1633746)
chr2 (134-202)||(9395011-9395079)
chr2 (159-275)||(32592483-32592598)
chr2 (160-260)||(42868534-42868634)
chr2 (160-275)||(41241190-41241305)
chr2 (136-275)||(41851408-41851547)
chr2 (173-271)||(42420356-42420444)
chr2 (124-202)||(2416184-2416262)
chr2 (135-189)||(12795664-12795718)
chr2 (160-218)||(28330414-28330472)
chr2 (134-219)||(31744237-31744320)
chr2 (175-261)||(42659223-42659309)
chr2 (133-190)||(15757809-15757866)
chr2 (159-203)||(3311940-3311984)
chr2 (214-269)||(1875077-1875132)
chr2 (161-204)||(2142561-2142604)
chr2 (133-204)||(40682492-40682563)
chr2 (134-193)||(43570297-43570356)
chr2 (159-205)||(31561881-31561927)
chr2 (159-205)||(41293359-41293405)
chr2 (150-203)||(5599180-5599233)
chr2 (167-196)||(39567817-39567846)
chr2 (214-274)||(2227117-2227177)
chr2 (140-204)||(36114306-36114370)
[»] scaffold0012 (1 HSPs)
scaffold0012 (167-206)||(207708-207747)
[»] scaffold0050 (1 HSPs)
scaffold0050 (134-199)||(58475-58540)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 402818 - 403092
Alignment:
Q  8 ttaagttttgctttttgatttggtattacataggctaatcattgttgaagtttaatttgggatttttgatgtatactttctcaaaagtaaagtaaaccct 107  Q
    |||||||||||||||||||||||||||||||||  | ||||||| ||||||| |||||||| |||||||||||| |||||||| |||||||| |||||||    
T  402818 ttaagttttgctttttgatttggtattacatagtttgatcattgatgaagttcaatttggggtttttgatgtattctttctcataagtaaagcaaaccct 402917  T
Q  108 agctgttcattgtttaaatttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgt 207  Q
    |||| || |||| ||| |||  |  |||||||||||   |  |||  ||| || ||||||||||  ||||| ||  ||||| |||||| |||||| |||     
T  402918 agcttttgattgattagattatgacctgtttggataggcaacttagttgcagcatatagcacaacagcttacca--ataagtgcttatctataagtttga 403015  T
Q  208 ggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgttttggtgtatat 284  Q
    | ||||||||||| | ||  ||||||||||| |  |||| |||||||||||||||| |||| |||||||||||||||    
T  403016 gaaagttatttttttagctaaagataaaataacgataaactgtttttgtatatgttataagctgttttggtgtatat 403092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 41336657 - 41336772
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    ||||||||||||||| ||||| ||||||||| |||||||||| |||||   ||| ||||||||| ||| |||||||||||   |||||||||||||||||    
T  41336657 gcttatagcacaagttcttattatgataagcacttatgtataggcttgcataagctatttttatagca-aagataaaataaagttaaattgtttttgtat 41336755  T
Q  259 atgttttaagttgtttt 275  Q
    ||||| ||| |||||||    
T  41336756 atgttataaattgtttt 41336772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 50681263 - 50681148
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||    ||| ||||||||| | | |||||||||||   |||||||||||||||||    
T  50681263 gcttatagcacaagaacttatcatgataagcgtttatgtataagcttacaaaagctatttttataggataagataaaataatgttaaattgtttttgtat 50681164  T
Q  259 atgttttaagttgttt 274  Q
    ||| | ||||||||||    
T  50681163 atgctataagttgttt 50681148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 403202 - 403297
Alignment:
Q  10 aagttttgctttttgatttggtattacataggctaatcattgttgaagtttaatttgggatttttgatgtatactttctcaaaagtaaagtaaaccc 106  Q
    ||||||| ||||||||||||||||||||| |  || |||||||||| ||| |||||||| ||||| |||||||||||||||||| ||||||| ||||    
T  403202 aagttttactttttgatttggtattacattgtgtactcattgttgatgttcaatttggg-tttttaatgtatactttctcaaaattaaagtacaccc 403297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 403422 - 403518
Alignment:
Q  159 gcttatagcacaagtgcttat-catgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgttttt 254  Q
    ||||||| || |||||||||| |||||||| ||||||| |||||||||| | |||||| |||||| ||| ||||||||||| | |||||||||||||    
T  403422 gcttatatcagaagtgcttattcatgataaacgcttatctataagcttgcgtaagttacttttatagcaaaagataaaataacgttaaattgttttt 403518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 43505829 - 43505947
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| |  |||| |||  ||||||||||||  ||  |||||||||||| ||||||||||||||||   ||| ||||||||| ||| ||||||    
T  43505829 tgtttggataaacaacttatttgcaacttatagcacaaacgc--atcatgataagcacttatgtataagcttgcataagctatttttatagcaaaagata 43505926  T
Q  234 aaatatcattaaattgttttt 254  Q
    ||||| | |||||||||||||    
T  43505927 aaataacgttaaattgttttt 43505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 18814962 - 18815033
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||| |||||| ||| |||||| ||||||||||||||||| |||||| ||| || ||||||||    
T  18814962 ctgtttggataaatggtttatttgcagcttatggcacaagtgcttatcat-ataagcacttttgcataagctt 18815033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 27087 - 27025
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgc 191  Q
    ||||||||||||||||| |  || | ||| |||||||||||||| ||||||||||||||||||    
T  27087 gggtctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataagcgc 27025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 15173493 - 15173427
Alignment:
Q  140 gataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    ||||||||| |||| | | |||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  15173493 gataaatagcttattttcagcttgtagcacaaacgcttatcatgataagcgcatatgtataagcttg 15173427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 35572005 - 35571951
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||    
T  35572005 ttatttgcagcttatagcacaagtggttatcatgacaagcacttatgtataagct 35571951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 50662921 - 50662851
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||| |  |||| ||| ||||||| |||||| |||||||||||| |||| |||||||||||||    
T  50662921 tgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgatgagcgtttatgtataagct 50662851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 21731817 - 21731772
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||    
T  21731817 gcttatagcacaagcgcttatcatgataagtgcttacgtataagct 21731772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 55084637 - 55084593
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  55084637 cttatagcataagtgattatcatgataagcgcttatgcataagct 55084593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 679160 - 679202
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    ||||||| |||| |||||||| |||||||||||||||||||||    
T  679160 gcttataacacatgtgcttataatgataagcgcttatgtataa 679202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 22030115 - 22030145
Alignment:
Q  174 gcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||||||||||||||||||||    
T  22030115 gcttatcatgataagcgcttatgtataagct 22030145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 44863151 - 44863081
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||| |  |||| ||| ||||||||||||||  ||| |||||||||| ||||||| |||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagct 44863081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 49004132 - 49004090
Alignment:
Q  161 ttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    |||||||||| | |||||| |||||||||||||||||||||||    
T  49004132 ttatagcacatgcgcttataatgataagcgcttatgtataagc 49004090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 54425968 - 54426055
Alignment:
Q  186 aagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||||||||||||||   ||| || |||| | |||| |||||||||| || |||||||  ||| |||||||| |||||||||||    
T  54425968 aagcgcttatgtataagcttgcataagctacttttgtagcagcagataaaataacactaaattg--tttatatatgttataagttgtttt 54426055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 7839531 - 7839490
Alignment:
Q  164 tagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  7839531 tagcacaagtgcttaccatgataagtgattatgtataagctt 7839490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 23277319 - 23277364
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||||  ||||| |||||||| |||||||||||||||    
T  23277319 gcttatagcacaagcacttataatgataagagcttatgtataagct 23277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 31076529 - 31076444
Alignment:
Q  190 gcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||||||||||   ||| ||||||||  ||| |||||||||||   ||||| |||||||||||||| | ||| |||||||    
T  31076529 gcttatgtataagcttgcataagctatttttagagcaaaagataaaataagtttaaactgtttttgtatatgctataaattgtttt 31076444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 54069564 - 54069475
Alignment:
Q  186 aagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||| ||||||||||||||||   | | |||||||||  || |||||||||||   |||||||||||||||||||| | ||| |||||||    
T  54069564 aagcacttatgtataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatgctataatttgtttt 54069475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 3155486 - 3155554
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| |  |||| ||| |||||||| ||||| ||||||||||||||||   ||||||||||||    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagct 3155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 22539234 - 22539166
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||  |||| ||| | |||||||| |||  |||||||||| ||||| |||||||||||||    
T  22539234 tttggataaataacttatttgcaggttatagcataagcccttatcatgacaagcgtttatgtataagct 22539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 40831212 - 40831162
Alignment:
Q  159 gcttatagcacaagtgcttatcatg---ataagcgcttatgtataagcttg 206  Q
    |||||||||||||| ||||||||||   ||||||||||||| |||||||||    
T  40831212 gcttatagcacaagcgcttatcatgataataagcgcttatgaataagcttg 40831162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 14956494 - 14956373
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| |  |||| ||| |||||||||||||  |||||||||||||||| ||||||||||||||||   ||| ||||||||| | | |||||     
T  14956494 tgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagcttgcataagctatttttattgtaaaagatg 14956395  T
Q  234 aaatatcattaaattgtttttg 255  Q
    ||||| ||||||||||||||||    
T  14956394 aaataacattaaattgtttttg 14956373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 40859882 - 40859837
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40859882 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 40859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 38353239 - 38353324
Alignment:
Q  152 atatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaata 238  Q
    |||||| |||||||  |||||||||||||||||||| ||||||||||||||||||   ||| ||||||||| ||| |||||||||||    
T  38353239 atatgcagcttatattacaagtgcttatcatgataatcgcttatgtataagcttgcataagctatttttat-gcaaaagataaaata 38353324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 38750270 - 38750370
Alignment:
Q  175 cttatcatgataagcgcttatgtataagcttgtggaagttatttttat-ggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtt 273  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||| ||||| ||| ||||||   ||||| |||||||||||||| | |||||||||    
T  38750270 cttatcatgataagcgcttatgtataagcttgcataagctatttttataggcag-agaaaaaataatgttaaaatgtttttgtatatgatataagttgtt 38750368  T
Q  274 tt 275  Q
    ||    
T  38750369 tt 38750370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 1058274 - 1058202
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||| ||||| || |||| ||| |||||||||||||| |||||  |||||||||||||||||||||||||    
T  1058274 ctgtttgaataaacagcttatttgcagcttatagcacaagcgcttactatgataagcgcttatgtataagctt 1058202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 36963549 - 36963473
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||| |||| | ||||| ||| |||||||||||||| |||||||||||||| |||||| | ||||||||    
T  36963549 gggtctgtttgggtaaacaatttatttgcagcttatagcacaagcgcttatcatgataaacgcttacggataagctt 36963473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 9130506 - 9130439
Alignment:
Q  137 ttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||| |||| ||| |||||||||||||||| | |||||||||| | ||||||||||||||    
T  9130506 ttggataaatagcttatttgcagcttatagcacaagtggtcatcatgataatcacttatgtataagct 9130439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 41821458 - 41821500
Alignment:
Q  164 tagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  41821458 tagcacaagtgcttatcatgataagcacttatgtataagcttg 41821500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 15180437 - 15180552
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    |||||||||||||| || ||||||||| ||  ||||| |||||| |||   ||||||||| ||  ||| |||||||  |||| ||||||| ||||||||     
T  15180437 gcttatagcacaagcgcgtatcatgatgagaacttatctataagtttgcataagttatttgtacagcaaaagataacgtatcgttaaattatttttgtaa 15180536  T
Q  259 atgttttaagttgttt 274  Q
    ||||| ||||||||||    
T  15180537 atgttataagttgttt 15180552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 15179049 - 15179091
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  15179049 cttatagcacaagtgcatatcatgatgagcgcttatgtataag 15179091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 2833494 - 2833449
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2833494 gcttatagcataagtgcttatcatgataagtgcttatgaataagct 2833449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 2840265 - 2840310
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2840265 gcttatagcataagtgcttatcatgataagtgcttatgaataagct 2840310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 2844952 - 2844997
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2844952 gcttatagcataagtgcttatcatgataagtgcttatgaataagct 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 26215402 - 26215447
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||    
T  26215402 gcttatagcacgagcgcttataatgataagcgcttatgtataagct 26215447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 40981000 - 40981056
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagc 189  Q
    ||||||||||||| || |||| ||| |||||||||||||| ||||||| ||||||||    
T  40981000 ctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataagc 40981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 16736035 - 16736093
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgt 272  Q
    |||||| || ||| ||||||||||| |||||||| ||||||||| ||||| ||||||||    
T  16736035 tattttgatagcaaaagataaaataacattaaatagtttttgtacatgttataagttgt 16736093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 29819084 - 29819026
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataa 187  Q
    ||||||||||||||||| |  |||| ||| |||||||||| ||| ||||||||||||||    
T  29819084 gggtctgtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgataa 29819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 31916537 - 31916567
Alignment:
Q  175 cttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||||||||||||||||||||    
T  31916537 cttatcatgataagcgcttatgtataagctt 31916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 35644125 - 35644055
Alignment:
Q  189 cgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtata 259  Q
    ||||||||||||||||||   ||| ||||||| ||||| |||||||| || | |||||||||||| |||||    
T  35644125 cgcttatgtataagcttgcttaagctatttttctggcaaaagataaattaccgttaaattgttttcgtata 35644055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 10114396 - 10114441
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||||    
T  10114396 gcttatagcataagtggttatgatgataagtgcttatgtataagct 10114441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 29168250 - 29168181
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||| | || |||| ||| |||||||||||||| | ||||||| | ||| |||||||||||||||    
T  29168250 gtttggatacacaggttatctgcagcttatagcacaagcgtttatcatcaaaagtgcttatgtataagct 29168181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 35534809 - 35534686
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||| ||| || |||| ||| |||||||||||| | | ||||||| |||||||| |||| ||||||||    ||| ||||||||| | | |||||    
T  35534809 ctgtttggaaaaacagcttatttgcagcttatagcacaggcgtttatcattataagcgc-tatgcataagcttacataagatatttttatag-aaaagat 35534712  T
Q  233 aaaatatcattaaattgtttttgtat 258  Q
    ||||||   |||||||||||||||||    
T  35534711 aaaataaagttaaattgtttttgtat 35534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 37444563 - 37444534
Alignment:
Q  175 cttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||||||||||||||||||||    
T  37444563 cttatcatgataagcgcttatgtataagct 37444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 40637476 - 40637423
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    |||| ||| |||||||||| ||||||||||||| |||||| ||||| |||||||    
T  40637476 ttatttgcagcttatagcataagtgcttatcataataagcacttatttataagc 40637423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 30956825 - 30956684
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| || |||| ||| |||||||||||||| ||||||||||||||||  ||||| ||||||||    ||| ||||| ||| ||| ||||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagata 30956726  T
Q  234 aaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||   |||||||||||||||||| | | |||||||||||    
T  30956725 aaataaagttaaattgtttttgtataggctataagttgtttt 30956684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 30972637 - 30972496
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| || |||| ||| |||||||||||||| ||||||||||||||||  ||||| ||||||||    ||| ||||| ||| ||| ||||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaaagata 30972538  T
Q  234 aaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||   |||||||||||||||||| | | |||||||||||    
T  30972537 aaataaagttaaattgtttttgtataggctataagttgtttt 30972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 275
Target Start/End: Original strand, 20170421 - 20170535
Alignment:
Q  161 ttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatat 260  Q
    ||||| ||||| ||||| ||||||||||||||||||||| ||||||   ||| ||||||||  ||| |||||||||||   |||||||||||||||||||    
T  20170421 ttatatcacaactgcttttcatgataagcgcttatgtatcagcttgcacaagctatttttactgcaaaagataaaataatgttaaattgtttttgtatat 20170520  T
Q  261 gttttaagttgtttt 275  Q
    | | |||||||||||    
T  20170521 gctataagttgtttt 20170535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 1508779 - 1508708
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    ||||||| ||| || |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  1508779 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 1508708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 31365472 - 31365399
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    |||| |||||||| || |||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31365472 ctgtgtggataaacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtataagcttg 31365399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 274
Target Start/End: Complemental strand, 35959655 - 35959515
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| || |||| ||| ||||||| ||||||  |||||||||||||| |||||||||||||||     ||| ||||| ||| | | | ||||    
T  35959655 tgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtataagctcacataagctatttctatagaaaaggata 35959556  T
Q  234 aaatatcattaaattgtttttgtatatgttttaagttgttt 274  Q
    |||||   ||||||| |||||||||||| | ||||||||||    
T  35959555 aaataaagttaaattatttttgtatatgctgtaagttgttt 35959515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 402714 - 402660
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||    
T  402714 ttatttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagct 402660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 12862419 - 12862306
Alignment:
Q  161 ttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatat 260  Q
    |||||||| ||| |||||| ||||||||| ||||||| ||||||||   ||  ||||||||| ||| |||||||||||   |||||||| ||||||||||    
T  12862419 ttatagcaaaagcgcttataatgataagcacttatgtttaagcttgcataatctatttttatagcaaaagataaaatagatttaaattg-ttttgtatat 12862321  T
Q  261 gttttaagttgtttt 275  Q
    | | |||||||||||    
T  12862320 gctataagttgtttt 12862306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 24685023 - 24684885
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||||| |  |||||| ||| ||||||||||||| | || |||||||||||||||| || ||||| ||    ||| ||||||||| | | |||||    
T  24685023 ctgtttggatagacggtttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcataagtttacataagctatttttatagaaaaagat 24684924  T
Q  233 aaaatatcattaaattgtttttgtatatgttttaagttg 271  Q
    ||||||   || ||||||||||||||||| | |||||||    
T  24684923 aaaataaattttaattgtttttgtatatgctataagttg 24684885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 944359 - 944438
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcac-aagtgcttatcatgataagc-gcttatgtataagcttg 206  Q
    ||||||||||||||||| |  |||| ||| ||||||| ||| |||||||||||||||||||| ||||| |||||||||||    
T  944359 gggtctgtttggataaacaacttatttgcagcttataacactaagtgcttatcatgataagcggcttacgtataagcttg 944438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 20880341 - 20880474
Alignment:
Q  127 ttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggca 226  Q
    ||||| ||||||||||| | |  |||| ||| | |||||||||||| | ||||||| ||||| ||||||||||||||||    ||| ||||||||| |||    
T  20880341 ttgggcctgtttggatagacaacttatttgcagtttatagcacaagcggttatcataataagtgcttatgtataagcttacataagctatttttatagca 20880440  T
Q  227 gaagataaaatatcattaaattgtttttgtatatg 261  Q
     | ||||||| |   ||||||||||||||||||||    
T  20880441 aatgataaaaca-agttaaattgtttttgtatatg 20880474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 12833881 - 12833934
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    |||||||| |||||||||| ||||||||||||| |||||| ||||| |||||||    
T  12833881 ttatatgcagcttatagcataagtgcttatcataataagcacttatttataagc 12833934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 29003030 - 29002961
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    ||||||||||||||| ||||| ||| |||||||| | ||| | |||||||||||| | ||||||||||||    
T  29003030 ctgtttggataaataatttatttgcagcttatagtaaaagcgtttatcatgataaacacttatgtataag 29002961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 39980616 - 39980741
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattg 249  Q
    |||| ||| |||||||| ||||   ||||||||||||||| |||||||||||| |||    || | ||||||| |||||| ||| |||| | ||||||||    
T  39980616 ttatttgcagcttataggacaaacacttatcatgataagcacttatgtataagtttgcattagctttttttatagcagaacatacaataacgttaaattg 39980715  T
Q  250 tttttgtatatgttttaagttgtttt 275  Q
    |||||| | ||| | |||||||||||    
T  39980716 tttttgaacatgctataagttgtttt 39980741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 35328351 - 35328288
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgta 198  Q
    ||||||||||||||| |||| ||| |||||||| ||||| |||||| ||||||||| ||||||||    
T  35328351 tgtttggataaatagcttatttgcagcttatag-acaagcgcttattatgataagcacttatgta 35328288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 36631221 - 36631109
Alignment:
Q  163 atagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgt 262  Q
    |||||||||||||||||||||||||||  |||||||||| || |   ||| ||||| ||| | | | |||||| ||   |||||||||||||||| |||     
T  36631221 atagcacaagtgcttatcatgataagcaattatgtataaactcgcttaagctatttctatagtaaaggataaagtaaagttaaattgtttttgtacatgc 36631122  T
Q  263 tttaagttgtttt 275  Q
    | |||||||||||    
T  36631121 tataagttgtttt 36631109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 31403238 - 31403309
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| || |||| ||| | || |||| |||||||||||||| |||||| ||||| ||||||||    
T  31403238 ctgtttggataaacaggttatttgcagtttctagcccaagtgcttatcatcataagcacttatatataagct 31403309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 35696176 - 35696251
Alignment:
Q  179 tcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgttttt 254  Q
    |||||||||| |||| ||||| | |||| | ||| ||||||||| ||| |||||||| || |||||||||||||||    
T  35696176 tcatgataagtgcttttgtatgaacttgcgtaagctatttttatagcaaaagataaactaacattaaattgttttt 35696251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 51929510 - 51929439
Alignment:
Q  184 ataagcgcttatgtataagctt-gtggaagttatttttatggcagaagataaaatatcattaaattgttttt 254  Q
    ||||| |||||||||||||||| |   ||| ||||||||| ||| ||||||||||| |||||||||||||||    
T  51929510 ataagtgcttatgtataagctttgcataagatatttttatagcaaaagataaaatagcattaaattgttttt 51929439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 18405979 - 18405889
Alignment:
Q  186 aagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcatt-aaattgtttttgtatatgttttaagttgtttt 275  Q
    ||||||||||||||||||||    ||||||||| ||| | | ||||||||||||| || || || |||||||||||| | |||||||||||    
T  18405979 aagcgcttatgtataagcttacataagttatttatataggaaaagataaaatatcgttgaatttttttttgtatatgctataagttgtttt 18405889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 23815960 - 23816002
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  23815960 cttatagccaaagtgcttatcatgataagcacttatgtataag 23816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 28240223 - 28240277
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||| ||| |||||||||||||| ||||||||||||||| |||||| | ||||||    
T  28240223 ttatctgcagcttatagcacaagcgcttatcatgataagtgcttatatttaagct 28240277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 30443660 - 30443690
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagc 189  Q
    |||||||||||||||||||||||||||||||    
T  30443660 gcttatagcacaagtgcttatcatgataagc 30443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34235265 - 34235195
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||| |  |||| ||  |||||||| ||| |||||||||||||||||| |||||||| |||||    
T  34235265 tgtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataagcacttatgtagaagct 34235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 46778385 - 46778307
Alignment:
Q  175 cttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttt 253  Q
    ||||||||||||||||||||||||| ||||| |  ||| ||||| ||| |||  ||||||||||   ||||||||||||    
T  46778385 cttatcatgataagcgcttatgtatcagcttatataagctatttctatagcaagagataaaataaagttaaattgtttt 46778307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 47249653 - 47249587
Alignment:
Q  138 tggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||| |||| ||| ||||||| ||||||  |||||||||||||  ||| |||||||||||    
T  47249653 tggataaatagcttatttgcagcttataacacaagcacttatcatgataaatgctcatgtataagct 47249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 49034383 - 49034321
Alignment:
Q  213 ttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||| ||| ||||||||||| | ||||||||||| || ||||| | |||||||||||    
T  49034383 ttatttttatagcaaaagataaaataccgttaaattgtttgtgcatatgctataagttgtttt 49034321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 5435738 - 5435774
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttat 195  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  5435738 gcttatagcataagtgcttatcatgataagtgcttat 5435774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 25447430 - 25447378
Alignment:
Q  137 ttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagc 189  Q
    ||||||||| ||||||| ||| ||||||| |||||| ||||||||||| ||||    
T  25447430 ttggataaacagtttatgtgcagcttataacacaagcgcttatcatgagaagc 25447378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 30574059 - 30574031
Alignment:
Q  176 ttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||||||||||||||||||    
T  30574059 ttatcatgataagcgcttatgtataagct 30574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 46886887 - 46886835
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgat 185  Q
    ||||||||||||| |  |||| ||| |||||||||| ||||||||||||||||    
T  46886887 ctgtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 6538382 - 6538524
Alignment:
Q  128 tgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcag 227  Q
    |||| |||||||||||||||| |||| ||| ||||||||||||||  ||||| ||||||||||||||||||||||||||   |||||| |||| | |||     
T  6538382 tgggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagcttgcataagttagttttttagcaa 6538481  T
Q  228 aagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||       ||||||||||| |||||||| | |||||||||||    
T  6538482 aagataa-----tgttaaattgtttatgtatatgctataagttgtttt 6538524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 18076083 - 18076208
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattg 249  Q
    |||| ||| |||||||||||||| ||||||||| |||||| ||||||||||||||||   ||||||||||||| ||| |||| ||||||   ||||||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataagcacttatgtataagcttgcataagttatttttatagcaaaagagaaaataaggttaaattg 18076182  T
Q  250 tttttgtatatgttttaagttgtttt 275  Q
    ||||| ||  || | |||||||||||    
T  18076183 tttttctaattgctataagttgtttt 18076208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 34430603 - 34430658
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  34430603 ttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagctt 34430658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 264251 - 264322
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| || || | || ||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  264251 ctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagct 264322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 29754249 - 29754206
Alignment:
Q  163 atagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  29754249 atagcacaagcgcttatcatgataagcgcttatgtattagcttg 29754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 24626165 - 24626307
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||||||| |  |||| | | ||||||||||||| ||||||||||||| |  ||||||||||||||||    ||| ||||| ||| | | | |||    
T  24626165 ctgtttggataaacaacttatttacagcttatagcacaaatgcttatcatgatgattgcttatgtataagcttacataagctatttctataggaaaggat 24626264  T
Q  233 aaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||| |   |||||||||||||||||||  | |||||||||||    
T  24626265 aaaacaaagttaaattgtttttgtatattctataagttgtttt 24626307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 32014097 - 32014160
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatg 196  Q
    ||||||||||||||   |||| ||| |||||||| | ||||||||||||| |||||||||||||    
T  32014097 ctgtttggataaattacttatttgcagcttatagaaaaagtgcttatcattataagcgcttatg 32014160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 35069432 - 35069503
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||| |||||| |  |||| ||| |||||||||||||| | ||||||||||||| ||||||| |||||||    
T  35069432 ctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagct 35069503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 10401181 - 10401139
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    ||||| |||||||  ||||||||||||||||||||||||||||    
T  10401181 cttattgcacaagcacttatcatgataagcgcttatgtataag 10401139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 30926434 - 30926480
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||| ||||||||||||||||  ||| ||||||||||    
T  30926434 gcttatagcacaagggcttatcatgataagcaattaagtataagctt 30926480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 34882564 - 34882526
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgta 198  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  34882564 cttatagaacaaatgcttatcatgataagcgcttatgta 34882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 19411687 - 19411614
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||||||| ||| |||| ||  |||||||||||||   ||| |||| |||||| ||||||||||||    
T  19411687 gggtctgtttggataagtagcttatttggagcttatagcacaaaaacttctcataataagctcttatgtataag 19411614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 23063691 - 23063650
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  23063691 cttatagcacaaatgattatcatgataagcgtttatgtataa 23063650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 30536390 - 30536475
Alignment:
Q  175 cttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatat 260  Q
    |||||||||||||  ||||||||||||| |||   ||| |||| |||| ||| | |||||||||   |||||||||||||||||||    
T  30536390 cttatcatgataaaagcttatgtataagtttgcataagctattattatagcaaatgataaaataatgttaaattgtttttgtatat 30536475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 12628276 - 12628316
Alignment:
Q  164 tagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||| ||| |||||||||||||||||||||||| ||||||    
T  12628276 tagcataagagcttatcatgataagcgcttatgtgtaagct 12628316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 30536701 - 30536637
Alignment:
Q  190 gcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgttttt 254  Q
    |||||||||||||||||   ||| ||||||||| ||| ||||||| ||| | |||||||||||||    
T  30536701 gcttatgtataagcttgcataagctatttttatagcaaaagataagataacgttaaattgttttt 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 5894353 - 5894282
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| || |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5894353 ctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagct 5894282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 14385927 - 14385821
Alignment:
Q  169 caagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaag 268  Q
    |||||||||||||||||||| ||||||||||||||| |  |||  ||||||||| ||| |||||| ||||   ||||||||||||||||| |||| ||||    
T  14385927 caagtgcttatcatgataagagcttatgtataagctggcagaaactatttttatagcaaaagatagaataatgttaaattgtttttgtatctgttataag 14385828  T
Q  269 ttgtttt 275  Q
    |||||||    
T  14385827 ttgtttt 14385821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 47499033 - 47498962
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| |  |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagct 47498962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 42391241 - 42391377
Alignment:
Q  138 tggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaat 237  Q
    |||||||| | ||||| ||||||||| |||||||  ||||||||||||||| |||||||||||||||||   ||  |||||||||  | |||   |||||    
T  42391241 tggataaacaatttatttgcggcttacagcacaaaagcttatcatgataagtgcttatgtataagcttgcttaaactatttttataac-gaaacaaaaat 42391339  T
Q  238 atcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    | |||||||||||||||||||||  | |||||||||||    
T  42391340 aacattaaattgtttttgtatattctataagttgtttt 42391377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 5741525 - 5741601
Alignment:
Q  126 tttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||| |||||||||||||||  |||| || |||||||||||||||  | ||||||||||||||||||||||||||    
T  5741525 tttgggcctgtttggataaatatcttatttgtggcttatagcacaagcacctatcatgataagcgcttatgtataag 5741601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 33541906 - 33541766
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataa 234  Q
    ||||||||||| |  |||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||   ||| ||||||||| ||  | ||||     
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttgaataagatatttttatagctaaggatat 33541807  T
Q  235 aatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||    ||||||| |||||||| ||| | |||||||||||    
T  33541806 aatgatgttaaattctttttgtacatgctctaagttgtttt 33541766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 18556823 - 18556917
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttt 253  Q
    ||||||||||||||  |||||| |||  ||||||| |||||||||||||  ||| ||||||||| ||| ||||||||||||  ||||||||||||    
T  18556823 gcttatagcacaagcacttatcgtgacgagcgcttgtgtataagcttgtataagctatttttattgcaaaagataaaatattgttaaattgtttt 18556917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 41195394 - 41195325
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||||||  |||| ||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  41195394 ctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataag 41195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 5720844 - 5720920
Alignment:
Q  126 tttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||| |||||||||||||||  |||| || |||||||| ||||||  | ||||||||||||||||||||||||||    
T  5720844 tttgggcctgtttggataaatatcttatttgtggcttataacacaagcacctatcatgataagcgcttatgtataag 5720920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 27146436 - 27146369
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||||| |||| ||| |||||||||| |||| | |||||||||||||| |||||||||||    
T  27146436 gtttggataaatagcttatttgcagcttatagcataagtacatatcatgataagcgtttatgtataag 27146369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 33546657 - 33546511
Alignment:
Q  126 tttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggc 225  Q
    |||||| ||||||||||||| || ||||  || ||||| |||||||||| ||||||||||| ||||||   ||||| ||||   ||| ||||||||||||    
T  33546657 tttgggcctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgatatgcgctt---tataatcttgattaagctatttttatggc 33546561  T
Q  226 agaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    | | |||| |||  |  |||||| |||||||||||| | |||||||||||    
T  33546560 aaaggatataatgacgctaaattctttttgtatatgctctaagttgtttt 33546511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 275
Target Start/End: Complemental strand, 1510509 - 1510368
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||||||| || |||| ||   ||||||||||||| ||||||| |||||||| ||||| ||||||||||   ||| ||||||||   || |||||    
T  1510509 ctgtttggataaacagcttatttgtatcttatagcacaagcgcttatcttgataagcacttatatataagcttgcaaaagctatttttaaaacaaaagat 1510410  T
Q  233 aaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
     |||||   || ||||||||||||||| ||| |||||||||||    
T  1510409 -aaataatgttcaattgtttttgtataggttataagttgtttt 1510368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 24552514 - 24552468
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  24552514 gcttatagcacaagtgattatcatgataagcgcttatgtacaagctt 24552468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 37473269 - 37473341
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||| |  |||| ||| |||||| |||||||| |||||||||| |||| |||||||||||||||    
T  37473269 ctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagctt 37473341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 3234196 - 3234153
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    ||||||||||||| |||||||||||||||||||||| |||||||    
T  3234196 cttatagcacaagcgcttatcatgataagcgcttatatataagc 3234153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 14331659 - 14331730
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||| |||||| || |||| ||  |||||||||||||| |||| ||||||||||| ||||||||||||||    
T  14331659 ctgtttagataaacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagct 14331730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 51688576 - 51688647
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||| |  |||| ||| |||||||| ||||||||||||||||||||| | |||| |||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataagctt 51688647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 14576827 - 14576725
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    ||||||||||||||  ||||||||||||||| ||||| ||||||||  || ||| |||||  || | | | |||||||||   |||||||||||||||||    
T  14576827 gcttatagcacaagctcttatcatgataagcacttatttataagctcatgtaagctatttccatagtaaaggataaaataaagttaaattgtttttgtat 14576728  T
Q  259 atg 261  Q
    |||    
T  14576727 atg 14576725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 38116349 - 38116304
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||    
T  38116349 gcttatagtacatgcgcttatcatgataagcgcttatgtataagct 38116304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 5063428 - 5063472
Alignment:
Q  228 aagataaaatatcattaaattgtttttgtatatgttttaagttgt 272  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||    
T  5063428 aagataaaataacattaacttgtttttgtatatgttataagttgt 5063472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 24562504 - 24562452
Alignment:
Q  132 tctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatga 184  Q
    |||||||||||||| || |||| ||| |||||||||||| |||||||||||||    
T  24562504 tctgtttggataaacagcttatttgcagcttatagcacatgtgcttatcatga 24562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 45975570 - 45975638
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    |||||||||||||||| |||| ||  ||||||| |||||   ||||||||||||||| |||||||||||    
T  45975570 ctgtttggataaatagcttatttgtagcttataacacaaacacttatcatgataagcccttatgtataa 45975638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 9572298 - 9572227
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||| || ||||  |||| ||| ||||||||||||||||| ||||||||| |||||| |||||| ||||    
T  9572298 ctgtttgaatgaataacttatttgcagcttatagcacaagtgcctatcatgatcagcgctaatgtattagct 9572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 30191863 - 30191930
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||||| |||| | |  ||||||||| |||||||||| ||||||||| ||| ||||||||    
T  30191863 gtttggataaatagcttatttacaacttatagcagaagtgcttattatgataagcacttgtgtataag 30191930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 30581683 - 30581738
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagc 189  Q
    |||||||||||| ||||||| ||| |||||||| |||||| ||| |||||||||||    
T  30581683 tgtttggataaacagtttatttgcagcttatagaacaagtacttttcatgataagc 30581738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 33835633 - 33835582
Alignment:
Q  210 aagttatttttatggcagaagataaaatatcattaaattgtttttgtatatg 261  Q
    ||||||||||||| | |||||||||||||| ||||||||  |||||||||||    
T  33835633 aagttatttttatagaagaagataaaatattattaaattacttttgtatatg 33835582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 33914187 - 33914136
Alignment:
Q  210 aagttatttttatggcagaagataaaatatcattaaattgtttttgtatatg 261  Q
    ||||||||||||| | |||||||||||||| ||||||||  |||||||||||    
T  33914187 aagttatttttatagaagaagataaaatattattaaattacttttgtatatg 33914136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 38247324 - 38247394
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| || | || ||| ||||||||||||||  |||||||||||| || ||||||||||||||    
T  38247324 ctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagct 38247394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 41505557 - 41505620
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatg 196  Q
    ||||||||||||| || |||| ||| |||||||||||||  |||||| |||||||| |||||||    
T  41505557 ctgtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgataagtgcttatg 41505620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 45145177 - 45145224
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatg 261  Q
    ||||||||| ||| |||||||||||  |||||||||||||||||||||    
T  45145177 tatttttatagcaaaagataaaataatattaaattgtttttgtatatg 45145224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 45661232 - 45661185
Alignment:
Q  210 aagttatttttatggcagaagataaaatatcattaaattgtttttgta 257  Q
    |||| |||||||| ||| ||||||||||| ||||||||||||||||||    
T  45661232 aagtcatttttatagcaaaagataaaataacattaaattgtttttgta 45661185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 6556916 - 6556946
Alignment:
Q  161 ttatagcacaagtgcttatcatgataagcgc 191  Q
    |||||||||||||||||||||||||||||||    
T  6556916 ttatagcacaagtgcttatcatgataagcgc 6556946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 11137800 - 11137846
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||| |||||| |||||||||||||  ||||||||||||||    
T  11137800 gcttatagcataagtgcatatcatgataagcaattatgtataagctt 11137846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 15942250 - 15942284
Alignment:
Q  170 aagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||||||||| |||||||||||||||    
T  15942250 aagtgcttatcatgataagtgcttatgtataagct 15942284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 189
Target Start/End: Original strand, 27976376 - 27976406
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagc 189  Q
    |||||||||||||||||||||||||||||||    
T  27976376 gcttatagcacaagtgcttatcatgataagc 27976406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 29904633 - 29904734
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaa 235  Q
    |||||||||| |  |||||||| ||||||||  |||| ||||||||||||||  ||||||| |||||||  |  ||| ||||||||| ||| ||||||||    
T  29904633 tttggataaacaacttatatgcagcttatagttcaagcgcttatcatgataaaagcttatg-ataagctcatataagctatttttatagcaaaagataaa 29904731  T
Q  236 ata 238  Q
    |||    
T  29904732 ata 29904734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 6556950 - 6556983
Alignment:
Q  242 ttaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||||||||||||||| |||||||||||    
T  6556950 ttaaattgtttttgtatatgttataagttgtttt 6556983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 24915170 - 24915109
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    ||||| ||| |||||||||||||||   |||||||||||||||||||| | |||| ||||||    
T  24915170 tatttctatagcagaagataaaataaagttaaattgtttttgtatatgctataagctgtttt 24915109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 33186172 - 33186217
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||    
T  33186172 gcttatagcacaggtgcttattatgataaccgcttatgcataagct 33186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 473032 - 473100
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgt 197  Q
    ||||||||||||||||| |  |||| ||| ||||| | || ||| |||||||||| |||||||||||||    
T  473032 gggtctgtttggataaacaacttatttgcagcttacaacaaaagcgcttatcatggtaagcgcttatgt 473100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 17834150 - 17834202
Alignment:
Q  153 tatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||| ||||||||||||||  |||||||||||||| | ||||| ||||||||    
T  17834150 tatgcagcttatagcacaagcacttatcatgataagtgtttatgcataagctt 17834202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 27820530 - 27820470
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgctt 193  Q
    ||||||||||||| |  |||| ||| |||||||||| ||| ||||||||||||||| ||||    
T  27820530 ctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataagggctt 27820470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Complemental strand, 37517344 - 37517252
Alignment:
Q  183 gataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||| ||||||||||||| |   ||||||||| |||  || || ||||||||   ||||||||||||||||||| || |||||| ||||    
T  37517344 gataagcgtttatgtataagctcgcataagttatttctataccaaaatataaaataaagttaaattgtttttgtatatattataagttatttt 37517252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 21568829 - 21568728
Alignment:
Q  132 tctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaaga 231  Q
    |||||||||||||| || || | ||| |||||||||| |||||||||||||||||||| ||||||||||||||||   ||| ||||||||| ||| ||||    
T  21568829 tctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagcttgcataagctatttttatagcaaaaga 21568730  T
Q  232 ta 233  Q
    ||    
T  21568729 ta 21568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 275
Target Start/End: Complemental strand, 38138680 - 38138537
Alignment:
Q  132 tctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaaga 231  Q
    |||||||||||||| || |||| |||| ||||||||||||   ||| |||||||||| | ||||||||||| |||   ||| ||||||||| | | ||||    
T  38138680 tctgtttggataaacagcttatttgcgtcttatagcacaatcacttgtcatgataagagtttatgtataaggttggataagctatttttatagtataaga 38138581  T
Q  232 taaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||| || | ||| |||| ||||||||||| | |||||||||||    
T  38138580 taaagtaacgttacattgattttgtatatgctataagttgtttt 38138537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 46078017 - 46078144
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||| ||| || ||||||||  |||| |||||||   | |||||||||||||||||||||||||||||    ||||||||||||| | | |||||    
T  46078017 ctgtttggacaaacagcttatatgcaacttaaagcacaaacacatatcatgataagcgcttatgtataagcttacataagttatttttatagaaaaagat 46078116  T
Q  233 aaaatatcattaaattgtttttgtatat 260  Q
    |||| |   |||||||||||||||||||    
T  46078117 aaaacaaagttaaattgtttttgtatat 46078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 19302725 - 19302617
Alignment:
Q  167 cacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgtttta 266  Q
    ||||| ||||||||||| |||||| |||| |||| | |||   ||| ||||||||  |||||||||| | || | |||||||||||||||||||||| ||    
T  19302725 cacaaatgcttatcatgttaagcgtttatatatatgtttgcataagctatttttacagcagaagatatagtaacgttaaattgtttttgtatatgttata 19302626  T
Q  267 agttgtttt 275  Q
    |||||||||    
T  19302625 agttgtttt 19302617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 38500123 - 38500051
Alignment:
Q  128 tgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtata 200  Q
    |||| |||||| |||||| || |||| ||| | |||||||||||| |||||||||||||||||||||||||||    
T  38500123 tgggcctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgcttatgtata 38500051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 33672958 - 33673029
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||   ||||| ||| |||||||||||||||  |||| ||||||||||||||||||||||||    
T  33672958 ctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataagcgcttatgtataagct 33673029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 3308456 - 3308383
Alignment:
Q  129 gggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||| |||||| || |||| ||  ||||||||||||||| ||| |||||||||| |||||||||||||    
T  3308456 gggtctgtttagataaacagcttatttggagcttatagcacaagtacttttcatgataagtgcttatgtataag 3308383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 45806651 - 45806535
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    |||||||||| |||  |||||||| |||||| ||||||||||||||||   ||| ||| ||||| ||| |||| |||||| | ||||||||||||| ||     
T  45806651 gcttatagcaaaagcacttatcataataagcacttatgtataagcttgcataagctatgtttatagcaaaagagaaaataacgttaaattgtttttctaa 45806552  T
Q  259 atgttttaagttgtttt 275  Q
     || | |||||||||||    
T  45806551 ttgctataagttgtttt 45806535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 9210498 - 9210571
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    ||||||||||||| || |||| ||| ||||||||| |||    |||||||||||| ||||||||||||||||||    
T  9210498 ctgtttggataaacagcttatttgcagcttatagcgcaaacatttatcatgataatcgcttatgtataagcttg 9210571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 15309656 - 15309623
Alignment:
Q  242 ttaaattgtttttgtatatgttttaagttgtttt 275  Q
    ||||||||||||||||||||||||||||||||||    
T  15309656 ttaaattgtttttgtatatgttttaagttgtttt 15309623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 33128622 - 33128699
Alignment:
Q  128 tgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||| ||||||||||||| || |||| ||| ||||| |||||||   |||||||||||||| ||||||| ||||||||    
T  33128622 tgggcctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgcttatgcataagctt 33128699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 33678663 - 33678724
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttat 195  Q
    |||||||| ||| || |||| |||  ||||||||||||||||||||||||||||| ||||||    
T  33678663 tgtttggacaaacagcttatttgcatcttatagcacaagtgcttatcatgataagagcttat 33678724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 45263958 - 45264035
Alignment:
Q  128 tgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||| ||||||||||||| |  |||| ||||||||||  |||||| ||||||||||| ||||||||| | ||||||||    
T  45263958 tgggcctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatgaaaagcgcttacgcataagctt 45264035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 45338396 - 45338461
Alignment:
Q  210 aagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||| || ||| || |||||||| | |||||||||||||||||||| | |||||||||||    
T  45338396 aagttattttcatagcaaaaaataaaataaccttaaattgtttttgtatatgctgtaagttgtttt 45338461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 420283 - 420371
Alignment:
Q  186 aagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgttt 274  Q
    ||||| |||||||||||||||   ||| ||| ||||| ||| |||||||||||   || ||||||||||||||||| | ||||||||||    
T  420283 aagcgtttatgtataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgttt 420371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 20234435 - 20234495
Alignment:
Q  215 atttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||| ||| |||||||||||| |||||||||||||||||  || | |||||||||||    
T  20234435 atttttatagcaaaagataaaatataattaaattgtttttgtaattgctataagttgtttt 20234495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 46280459 - 46280387
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||| ||||||| |   |||||||||||||| | |||||||||||||| || ||| ||||||||    
T  46280459 ctgtttggataaacagtttatttatagcttatagcacaagcgtttatcatgataagcactcatgcataagctt 46280387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 4970985 - 4970851
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaa 235  Q
    ||||||||||  | |||| ||| |||||||| | |||| | || ||||||||||| ||||||||||||||    ||| ||||| ||| ||| ||||||||    
T  4970985 tttggataaacggcttatttgcagcttatagaaaaagtccctaccatgataagcggttatgtataagcttacataagctatttctatagcaaaagataaa 4970886  T
Q  236 atatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||     |||||||||||||||||| | |||||| ||||    
T  4970885 ata-----aaattgtttttgtatatgctataagttctttt 4970851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 5947031 - 5947099
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||||| |||| ||  |||||||||||||    ||||||||||| || |||||||||||||||    
T  5947031 ctgtttggataaatagcttatttgaagcttatagcacaa----ttatcatgataggcacttatgtataagctt 5947099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 33553007 - 33552940
Alignment:
Q  137 ttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||| |  |||| ||| |||||| |||||||  |||| |||||||||||||||||||||||||    
T  33553007 ttggataaacaacttatttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagct 33552940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 47795838 - 47795905
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    ||||| |||||| || |||| ||| |||||||||| ||| |||||||||||||| | |||||||||||    
T  47795838 tgtttagataaacagcttatttgcagcttatagcataagcgcttatcatgataaccacttatgtataa 47795905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 206
Target Start/End: Original strand, 8704509 - 8704539
Alignment:
Q  176 ttatcatgataagcgcttatgtataagcttg 206  Q
    |||||||||||||||||||||||||||||||    
T  8704509 ttatcatgataagcgcttatgtataagcttg 8704539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 27863897 - 27863843
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataa 187  Q
    ||||||||||||| |  |||| ||  |||||||||||||||||||||||||||||    
T  27863897 ctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 17944434 - 17944401
Alignment:
Q  242 ttaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||||||||||||||| |||||||||||    
T  17944434 ttaaattgtttttgtatatgttgtaagttgtttt 17944401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 20269527 - 20269588
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    ||||||||| ||| ||||||||| |   |||||||||||||||| ||||| |||||||||||    
T  20269527 tatttttatagcaaaagataaaacaaagttaaattgtttttgtaaatgttataagttgtttt 20269588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 18865249 - 18865181
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||||| |  |||| ||| |||||||||||||  ||||||||||||||| | |||| ||||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataagtgtttatttataag 18865181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 32714345 - 32714373
Alignment:
Q  176 ttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||||||||||||||||||    
T  32714345 ttatcatgataagcgcttatgtataagct 32714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 48140137 - 48140226
Alignment:
Q  184 ataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||||||||||||||||   ||| |||||||||  || |||||||||||  | || |||||||||  ||||| | |||||||||||    
T  48140137 ataagcgcttatgtataagcttgcataagctatttttataacaaaagataaaata--actagattgtttttcaatatgctataagttgtttt 48140226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 25460963 - 25461103
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| || ||||||   |||||||||| |||  |||||||||||||| |||||| |||||||||| | ||| ||||||| | ||| ||||||    
T  25460963 tgtttggataaacagcttatatttagcttatagcataagcacttatcatgataagagcttatatataagcttgcgtaagctatttttctagcaaaagata 25461062  T
Q  234 aaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    || ||   ||  |||||||||||||||||| |||||||||||    
T  25461063 aa-taaagttgtattgtttttgtatatgttataagttgtttt 25461103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 16458136 - 16458037
Alignment:
Q  175 cttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgttt 274  Q
    |||||| ||||||| |||||| ||||||||||   ||| ||||||||| ||| ||||||||||| | |||||||||||||||||||| | ||||||||||    
T  16458136 cttatcctgataagtgcttatatataagcttgcataagctatttttatagcaaaagataaaataac-ttaaattgtttttgtatatgctataagttgttt 16458038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 39105361 - 39105415
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  39105361 ttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagct 39105415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 42646551 - 42646597
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42646551 gcttatagcacaagtgcttatcatgataagcgcttatatataagctt 42646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 19460572 - 19460508
Alignment:
Q  137 ttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    ||||||||| || |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  19460572 ttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataagcacttatgtataa 19460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 249
Target Start/End: Complemental strand, 25461955 - 25461840
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||||||  || |||| ||  ||||||| |||||| ||||||||||||||| | |||| ||||||||||   ||| ||||||||| |||||||||    
T  25461955 ctgtttggataagcaggttatttgtagcttataacacaagcgcttatcatgataagtggttatatataagcttgcataagctatttttatagcagaagat 25461856  T
Q  233 aaaatatcattaaattg 249  Q
     ||||||| ||||||||    
T  25461855 -aaatatcgttaaattg 25461840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 9202938 - 9202867
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| |  |||| ||| |||||||||||||||| ||||||||||||| |||||| ||||||||    
T  9202938 ctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagct 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 1465206 - 1465138
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| || ||||  || | |||||||| |||||||||||| ||||||||||||||||||||||    
T  1465206 tttggataaacagattattcgcagtttatagcataagtgcttatcaagataagcgcttatgtataagct 1465138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 3735691 - 3735619
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||| |   ||| ||| |||||||||||||| | ||||||||||||||||||||| ||||||||    
T  3735691 ctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgataagcgcttatggataagctt 3735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 10639825 - 10639952
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagata 233  Q
    |||||||||||| || |||| |||  |||| |||| ||||| |||||| ||||||| ||||||||||||  | |  ||| ||||| ||| ||| ||||||    
T  10639825 tgtttggataaacagcttatttgcaactta-agcaaaagtggttatcacgataagcacttatgtataagtctatataagctatttctatagcaaaagata 10639923  T
Q  234 aaatatcattaaattgtttttgtatatgt 262  Q
    ||||   ||||||||||||||||||||||    
T  10639924 aaattaaattaaattgtttttgtatatgt 10639952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 25461800 - 25461705
Alignment:
Q  179 tcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||||||||| | |||| ||||||||||   ||| ||||||||| ||| |||||||| |||| |||||||| ||| ||||||||| |||||||||||    
T  25461800 tcatgataagtggttatatataagcttgcataagctatttttatagcaaaagataaa-tatcgttaaattggtttagtatatgttataagttgtttt 25461705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 31051794 - 31051904
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||    ||| | ||| ||||||| ||||||||     ||||||||||||| ||||    
T  31051794 gcttatagcacaagtgcttatcatgataaatgattatctataagcttacataagctgtttctatggcaaaagataaa-----attaaattgttttggtat 31051888  T
Q  259 atgttttaagttgttt 274  Q
    ||| | ||||||||||    
T  31051889 atgctataagttgttt 31051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 7319185 - 7319139
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  7319185 gcttatagcacaagcgcttatcatgataagcacttatgcataagctt 7319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 7999127 - 7999181
Alignment:
Q  184 ataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaata 238  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||| |||||||    
T  7999127 ataagcgcttatgtataagcttgcataagttatttttatggcaaaaggtaaaata 7999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 29925754 - 29925852
Alignment:
Q  176 ttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgttt 274  Q
    ||||||| |||| |||||| ||||| |||||   ||| ||||||||| ||| ||||||||||| | ||||||||||| ||||| || | ||||||||||    
T  29925754 ttatcataataaacgcttaagtatatgcttgcataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtatgtgctataagttgttt 29925852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 32372495 - 32372561
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtata 200  Q
    |||||||||||| |  |||| ||| ||||||||||||||  ||||||||||||||| ||||||||||    
T  32372495 tgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtata 32372561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 28776854 - 28776926
Alignment:
Q  132 tctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||||||| |  |||| ||| |||||||||  |||  |||||||||||||| |||||||||||||||    
T  28776854 tctgtttggataaacaacttatttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagct 28776926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 42573970 - 42573898
Alignment:
Q  133 ctgtttggataaatagttta-tatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| || ||| | ||| |||||||||   || |||||||||||||||||||||||||||||||    
T  42573970 ctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagct 42573898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 12425468 - 12425519
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    |||| ||| |||||||| ||||||| |||||||||||| |||||||||||||    
T  12425468 ttatttgcagcttatagtacaagtgtttatcatgataaacgcttatgtataa 12425519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 16937988 - 16937941
Alignment:
Q  228 aagataaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    ||||||||||| | |||||||||||||||||||| | |||||||||||    
T  16937988 aagataaaataacgttaaattgtttttgtatatgctataagttgtttt 16937941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 34669901 - 34669790
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    ||||||||||||||| ||||||||||||||| ||||| | || ||||    || |||||| ||| | | ||||||||||   |||||||||||||||||     
T  34669901 gcttatagcacaagttcttatcatgataagcacttatttttatgcttacctaaattatttctatagaacaagataaaatgaaattaaattgtttttgtac 34669802  T
Q  259 atgttttaagtt 270  Q
    ||| | ||||||    
T  34669801 atgctctaagtt 34669790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 40848638 - 40848705
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataa 201  Q
    |||||||||||| |||| || |||  ||||||| |||||||||| | ||||||||| |||||||||||    
T  40848638 tgtttggataaacagttaatttgcatcttatagtacaagtgcttttaatgataagcacttatgtataa 40848705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 7984875 - 7984929
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||| ||| |||||||| ||| | |||||||||||||||||||||||| ||||||    
T  7984875 ttatttgcagcttatagtacatgcgcttatcatgataagcgcttatgtttaagct 7984929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 24030601 - 24030547
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataag 188  Q
    |||||||||||| || |||| ||| ||||||||||||||  ||||||||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataag 24030547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 36227721 - 36227791
Alignment:
Q  189 cgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtata 259  Q
    ||||||||||||||||||   ||  ||||||||| ||| ||||||||||| | |||||||| |||||||||    
T  36227721 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcgttaaattgattttgtata 36227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 3569134 - 3569097
Alignment:
Q  148 gtttatatgcggcttatagcacaagtgcttatcatgat 185  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  3569134 gtttatttgcagcttatagcacaagtgcttatcatgat 3569097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 10772042 - 10771997
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| |||||||||||||||||| | | ||||||||||||    
T  10772042 gcttatagcataagtgcttatcatgataaacacatatgtataagct 10771997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 16938078 - 16938001
Alignment:
Q  122 taaatttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtat 199  Q
    ||||||| || ||||||||| ||| |  |||| ||  ||||||| |||||||| |||||||||||||| |||||||||    
T  16938078 taaatttaggcctgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataagcacttatgtat 16938001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 20982298 - 20982254
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  20982298 gcttatagcataagtgcttatcat-ataagtgcttatgtataagct 20982254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 32941341 - 32941413
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    ||||||||||||| || ||||  || |||||||||| |||  |||| ||||||||||||||| |||||||||||    
T  32941341 ctgtttggataaacagcttattagcagcttatagca-aagcacttaccatgataagcgcttacgtataagcttg 32941413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 36797273 - 36797204
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||| |||| ||||||| |||  |||||||||||||  |||||||| ||||  ||||||||||||||||    
T  36797273 tttgggtaaacagtttatttgcaacttatagcacaagcacttatcattataactgcttatgtataagctt 36797204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 42582818 - 42582863
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||    
T  42582818 gcttatagcataagcgtttatcataataagcgcttatgtataagct 42582863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 42100199 - 42100263
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgt 197  Q
    |||||||||||||||  |||| ||| ||||||| |||||| |||||| || |||| |||||||||    
T  42100199 ctgtttggataaataacttatttgcagcttatatcacaagcgcttataataataaacgcttatgt 42100263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 41407171 - 41407243
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||| || || | ||| |||||||||||||| |||||||||||||||| |||||||||||||||    
T  41407171 ctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagctt 41407243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 275
Target Start/End: Complemental strand, 39659708 - 39659567
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagat 232  Q
    ||||||||||||| |  |||| ||| ||||| ||||||| |||||||||||||||||||||||||||||| |||   |   || ||||||  || |||||    
T  39659708 ctgtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtataagtttggatacacta-ttttataacaaaagat 39659610  T
Q  233 aaaatatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    | |||| | ||||||||||||||| |||||| ||| |||||||    
T  39659609 acaataacgttaaattgtttttgtctatgttataacttgtttt 39659567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 26201925 - 26202015
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcaga-agataaaatatcattaaattg 249  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||   ||| ||||||||| ||| | |||||||||| | ||||||||    
T  26201925 cttatagcacaagcgcttatcatgataagcccttatatataagcttgcataagctatttttatagcaaagagataaaataacgttaaattg 26202015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 1633746 - 1633682
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgt 197  Q
    ||||||||||||| || |||| ||| |||||||||| |||||||||||||||||||  |||||||    
T  1633746 ctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataagatcttatgt 1633682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 9395011 - 9395079
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    |||||||||| |||| |||| ||||||||||||||||||  ||||||||||||| | || |||||||||    
T  9395011 tgtttggatacatagcttatttgcggcttatagcacaagctcttatcatgataaacactcatgtataag 9395079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 32592483 - 32592598
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtat 258  Q
    |||||||||||||   |||||||| |||||||||||||||||||||||   ||  ||||||||| | | |||||||||||   |||||||| ||||||||    
T  32592483 gcttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataatgttaaattg-ttttgtat 32592581  T
Q  259 atgttttaagttgtttt 275  Q
    | | | |||||||||||    
T  32592582 acgctataagttgtttt 32592598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 42868634 - 42868534
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtata 259  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||    ||| |||||| || | | |||||||||||   ||||||||||||||||||    
T  42868634 cttatagcacaagcgcttatcatgataggcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgtttttgtata 42868535  T
Q  260 t 260  Q
    |    
T  42868534 t 42868534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 41241305 - 41241190
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtata 259  Q
    |||||||||||||  |||||||||||| ||||||||| ||||||||    ||| ||||| ||| | | ||||||||||    ||||||||||||||||||    
T  41241305 cttatagcacaagcacttatcatgatatgcgcttatggataagcttacataagctatttctataggaaaagataaaatgaagttaaattgtttttgtata 41241206  T
Q  260 tgttttaagttgtttt 275  Q
    || | ||||| |||||    
T  41241205 tgctataagtagtttt 41241190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 41851408 - 41851547
Alignment:
Q  136 tttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaa 235  Q
    |||||||||| |  |||| ||| || ||||||||||| |||||||||| ||| ||||||| |||||||||     || ||||| ||| | | |||||| |    
T  41851408 tttggataaacatcttatttgcagcatatagcacaagcgcttatcatgctaaacgcttatatataagcttacacgagatatttatataggaaaagataca 41851507  T
Q  236 atatcattaaattgtttttgtatatgttttaagttgtttt 275  Q
    |||   |||||||||||||||||||| | |||||||||||    
T  41851508 ataaagttaaattgtttttgtatatgctataagttgtttt 41851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 42420444 - 42420356
Alignment:
Q  173 tgcttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttg 271  Q
    |||||||||||||||||||||| |||||||||          |||||||| ||| ||||||||||| | |||||||||||||||||||| | |||||||    
T  42420444 tgcttatcatgataagcgcttacgtataagct----------atttttatagcaaaagataaaataacgttaaattgtttttgtatatgatataagttg 42420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 2416184 - 2416262
Alignment:
Q  124 aatttgggtctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataag 202  Q
    ||||||||  |||||||||||| |  |||| | | ||||||||||||||| ||||||||| |||| |||||||||||||    
T  2416184 aatttggggatgtttggataaacaacttattttcagcttatagcacaagttcttatcatgttaagtgcttatgtataag 2416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 12795664 - 12795718
Alignment:
Q  135 gtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagc 189  Q
    ||||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||    
T  12795664 gtttggataaacagtttatttgcagtttatagcataagtgcttatcatgataagc 12795718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 28330472 - 28330414
Alignment:
Q  160 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttattt 218  Q
    |||||||||||||  ||||||||||||||||| |||| ||||||||||| ||| |||||    
T  28330472 cttatagcacaagcacttatcatgataagcgcatatgcataagcttgtgtaagctattt 28330414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 31744237 - 31744320
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagcttgtggaagttatttt 219  Q
    ||||||| |||| || |||| ||  ||||||||||||||  ||||  |||||||||||||||||||||||||| | ||||||||||    
T  31744237 tgtttggttaaacagcttatttgtagcttatagcacaagcactta--atgataagcgcttatgtataagcttgcgtaagttatttt 31744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 42659309 - 42659223
Alignment:
Q  175 cttatcatgataagcgcttatgtataagcttgtggaagttatttttatggcagaagataaaatatcattaaattgtttttgtatatg 261  Q
    |||||||||||||||||||||||||||||||    ||| ||||||||||| | | | |||||||   | ||||||||||||||||||    
T  42659309 cttatcatgataagcgcttatgtataagcttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatg 42659223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 15757866 - 15757809
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcg 190  Q
    ||||||||||||| || |||| | | |||||||||||||| |||||||||||||||||    
T  15757866 ctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataagcg 15757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 3311940 - 3311984
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  3311940 gcttatagcacaagtgattatcatgaaaagtgcttatgtataagc 3311984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 1875077 - 1875132
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagt 269  Q
    |||| |||| ||| ||||||||||| |||||||||| ||||||||||||| |||||    
T  1875077 tattgttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaagt 1875132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 2142561 - 2142604
Alignment:
Q  161 ttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||    
T  2142561 ttatagcacaagaacttatcatgataagcgcttgtgtataagct 2142604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 40682563 - 40682492
Alignment:
Q  133 ctgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||||||| |  |||| |||  || ||||| |||| |||||||||| ||||||||||||||||||||    
T  40682563 ctgtttggataaacatcttatttgcaactcatagcgcaagcgcttatcatggtaagcgcttatgtataagct 40682492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 43570297 - 43570356
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgctt 193  Q
    ||||||| |||| || |||| ||| ||||||||||||||  |||||||||||||||||||    
T  43570297 tgtttgggtaaacagcttatttgcagcttatagcacaagcacttatcatgataagcgctt 43570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 31561927 - 31561881
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    |||||||||||||| | |||||||||||||||||||  |||||||||    
T  31561927 gcttatagcacaagcgtttatcatgataagcgcttacatataagctt 31561881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 41293405 - 41293359
Alignment:
Q  159 gcttatagcacaagtgcttatcatgataagcgcttatgtataagctt 205  Q
    ||||||||||||||||| ||||||| ||||||| ||||| |||||||    
T  41293405 gcttatagcacaagtgcgtatcatggtaagcgcgtatgtgtaagctt 41293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 5599233 - 5599180
Alignment:
Q  150 ttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagc 203  Q
    |||| ||| |||||||||| ||||||||||||| |||||| ||||| |||||||    
T  5599233 ttatttgcagcttatagcataagtgcttatcataataagcacttatttataagc 5599180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 39567846 - 39567817
Alignment:
Q  167 cacaagtgcttatcatgataagcgcttatg 196  Q
    ||||||||||||||||||||||||||||||    
T  39567846 cacaagtgcttatcatgataagcgcttatg 39567817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 2227117 - 2227177
Alignment:
Q  214 tatttttatggcagaagataaaatatcattaaattgtttttgtatatgttttaagttgttt 274  Q
    ||||| ||||| | |||||||||||  || ||||||||||||| |||||| ||||||||||    
T  2227117 tatttctatggtaaaagataaaataaaataaaattgtttttgtgtatgttataagttgttt 2227177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 36114306 - 36114370
Alignment:
Q  140 gataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtataagct 204  Q
    ||||||||| |||| ||| |||||||| ||| ||| ||||||||||||| |||||| ||| ||||    
T  36114306 gataaataggttatttgcagcttatagtacacgtgtttatcatgataagtgcttatatattagct 36114370  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 207747 - 207708
Alignment:
Q  167 cacaagtgcttatcatgataagcgcttatgtataagcttg 206  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  207747 cacaagtgcttatcatgataagcacttatgtataagcttg 207708  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 58475 - 58540
Alignment:
Q  134 tgtttggataaatagtttatatgcggcttatagcacaagtgcttatcatgataagcgcttatgtat 199  Q
    |||||||||||| |  |||| ||| ||||| ||||||||||||| |||| |||||| |||||||||    
T  58475 tgtttggataaacaacttatttgcagcttagagcacaagtgcttgtcataataagcacttatgtat 58540  T

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