View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_84 (Length: 275)

Name: NF9444_low_84
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_84
NF9444_low_84
[»] chr7 (3 HSPs)
chr7 (1-261)||(1290222-1290480)
chr7 (181-260)||(24944670-24944749)
chr7 (192-261)||(4436564-4436633)
[»] chr8 (4 HSPs)
chr8 (162-255)||(4540342-4540435)
chr8 (145-255)||(19951467-19951576)
chr8 (56-128)||(8718467-8718539)
chr8 (153-255)||(6009873-6009975)
[»] chr4 (2 HSPs)
chr4 (150-252)||(12317619-12317720)
chr4 (180-255)||(42010964-42011039)
[»] chr6 (1 HSPs)
chr6 (80-209)||(5496899-5497031)
[»] scaffold0067 (1 HSPs)
scaffold0067 (145-189)||(32328-32372)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 1290480 - 1290222
Alignment:
Q  1 aactaacagaaacttacccatcatagagagaagactatctttcacaagttgctactagtgttatcatctcaaactccatagtagagtgagctaatatagt 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1290480 aactaacggaagcttacccatcatagagagaagactatctttcaccagttgctgctagtgttatcatctcaaactccatagtagagtgagctaatatagt 1290381  T
Q  101 ttatttcttaaatttccaagaaacaacttctccatcaaaattaaatatattcattggttgctttggaatcatctgacaaagtgttccaagttgcatatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  1290380 ttatttcttaaatttccaagaaacaacttctccatcaaaattaa--atattcattggtcgctttggaatcatctgacaaagtgttccatgttgcatatgt 1290283  T
Q  201 gtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatggttattttt 261  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1290282 gtatccttccaggaaagcaggaaacctttgataatgtaatacaagattcatggttattttt 1290222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 24944749 - 24944670
Alignment:
Q  181 gtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatggttatttt 260  Q
    |||||||||  ||||| ||||||||||| || || ||||| ||| |||||||||||||||||||| ||||||||| ||||    
T  24944749 gtgttccaatatgcatttgtgtatcctttcacgatagcagaaaatctttgataatgtaatccaaggttcatggttttttt 24944670  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 4436633 - 4436564
Alignment:
Q  192 tgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatggttattttt 261  Q
    ||||||| ||| ||||| ||||| | ||  ||| |||||||||||||||||||| |||||| ||||||||    
T  4436633 tgcatatatgtgtcctttcaggacaacataaaatctttgataatgtaatccaaggttcatgattattttt 4436564  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 4540435 - 4540342
Alignment:
Q  162 tttggaatcatctgacaaagtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatggtt 255  Q
    ||||||||||||| | || ||||||||| |||||| | |||||| ||||| || | ||| |||||||||||||||||||||||| |||||||||    
T  4540435 tttggaatcatctaataaggtgttccaatttgcatctatgtatctttccaagacaacagaaaacctttgataatgtaatccaaggttcatggtt 4540342  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 19951467 - 19951576
Alignment:
Q  145 atatattcattggttgctttggaatcatctgacaaagtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaa 244  Q
    ||||||||| | || ||||||||||||||||| || |||||||||  | ||||||||||||||| || || |  | |||| |||||||||| ||||||||    
T  19951467 atatattcactagtcgctttggaatcatctgataaggtgttccaatctacatatgtgtatccttacaagataaga-gaaatctttgataatataatccaa 19951565  T
Q  245 gattcatggtt 255  Q
    | |||||||||    
T  19951566 ggttcatggtt 19951576  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 8718539 - 8718467
Alignment:
Q  56 tagtgttatcatctcaaactccatagtagagtgagctaatatagtttatttcttaaatttccaagaaacaact 128  Q
    ||||| |||||||||| ||| ||||||||| || ||||||||||| | ||||||| ||||  |||||||||||    
T  8718539 tagtgatatcatctcagacttcatagtagactgggctaatatagtctgtttcttagatttataagaaacaact 8718467  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 6009975 - 6009873
Alignment:
Q  153 attggttgctttggaatcatctgacaaagtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatg 252  Q
    ||||||| ||||||| |||||| | |||||||||||| |||| | |||| ||| ||| |||| | | |||||| | ||||||| ||||||||  ||||||    
T  6009975 attggttcctttggagtcatctaataaagtgttccaatttgcgtttgtgaatctttcaaggatatctggaaacatatgataatctaatccaaagttcatg 6009876  T
Q  253 gtt 255  Q
    |||    
T  6009875 gtt 6009873  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 12317619 - 12317720
Alignment:
Q  150 ttcattggttgctttggaatcatctgacaaagtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattc 249  Q
    |||| |||| ||||||||||||||||| || |||||||||  ||||||||||||||||| ||||| |  |  |||  ||||||||||||||||||| |||    
T  12317619 ttcactggtcgctttggaatcatctgataaggtgttccaatctgcatatgtgtatccttacaggacaaga-taaatttttgataatgtaatccaaggttc 12317717  T
Q  250 atg 252  Q
    |||    
T  12317718 atg 12317720  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 42011039 - 42010964
Alignment:
Q  180 agtgttccaagttgcatatgtgtatccttccaggaaagcaggaaacctttgataatgtaatccaagattcatggtt 255  Q
    |||||||||| ||||||  |||||| |||| | || ||  ||||||||||||||||||||| |||| |||||||||    
T  42011039 agtgttccaatttgcattagtgtatgcttcaatgatagttggaaacctttgataatgtaatacaaggttcatggtt 42010964  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 5496899 - 5497031
Alignment:
Q  80 agtagagtgagctaatatagtttatttcttaaatttcc-aagaaacaacttctccatcaaaattaa--atatattcattggttgctttggaatcatctga 176  Q
    |||||| ||||| |||||| ||| ||||||| |||| | ||||||||||| ||||| ||| |||||  ||||||||| | || |||||| |||| ||| |    
T  5496899 agtagactgagccaatatattttgtttcttagattttctaagaaacaactcctccaacaatattaaatatatattcactagtcgctttgaaatcctctaa 5496998  T
Q  177 caaagtgttccaagttgcatatgtgtatccttc 209  Q
     || ||||| |||  ||||||||||||||||||    
T  5496999 taaggtgttacaatatgcatatgtgtatccttc 5497031  T

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Target: scaffold0067 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 32372 - 32328
Alignment:
Q  145 atatattcattggttgctttggaatcatctgacaaagtgttccaa 189  Q
    |||||||| ||||| |||||||||||||| ||||| |||||||||    
T  32372 atatattcgttggtcgctttggaatcatccgacaaggtgttccaa 32328  T

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