View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_85 (Length: 274)
Name: NF9444_low_85
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 5466633 - 5466382
Alignment:
| Q |
18 |
gaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataacta |
117 |
Q |
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| T |
5466633 |
gaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataacta |
5466534 |
T |
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| Q |
118 |
cacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaaggccatttttgtgcttgccatcatcacactagaggatatagaacaaaa |
217 |
Q |
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| T |
5466533 |
cacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaagacgattcttgtgcttgccatcatcacactagaggatatagaacaaaa |
5466434 |
T |
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| Q |
218 |
tggcaagtaattttttggtttgtataagttatatatctttgtctctgcttct |
269 |
Q |
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| T |
5466433 |
tggcaagtaattttttggtttgtataagttatatatctttgtttctgtttct |
5466382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 5476299 - 5476109
Alignment:
| Q |
18 |
gaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataacta |
117 |
Q |
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| T |
5476299 |
gaaaggcaattggaaggatcattgagatcttttttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctcttaactt |
5476200 |
T |
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| Q |
118 |
cacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaaggccatttttgtgcttgccatcatcacactagaggatat |
208 |
Q |
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| T |
5476199 |
cacattgagttgatgcaaaaaggaagaagagagaaataacaatatgtccaatgatgatttttgtgcttgccatcatcccaccagaggatat |
5476109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 5481387 - 5481196
Alignment:
| Q |
17 |
agaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataact |
116 |
Q |
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||||||||||||| ||||||| || ||||| | |||||||||||||| |||||||| |||||||||||||||||||||| |||||| ||||| |
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| T |
5481387 |
agaaaggcaattgtaaggatcattgagatcttttttgacgttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggcttttaact |
5481288 |
T |
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| Q |
117 |
acacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaaggccatttttgtgcttgccatcatcacactagaggatat |
208 |
Q |
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| T |
5481287 |
tcacattgagttgatgcaaaaaggaagaagagaggaataacaatatgtacactgatgatttttgtgcttgccatcatcccaccagaggatat |
5481196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 5489421 - 5489269
Alignment:
| Q |
17 |
agaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataact |
116 |
Q |
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|||||||||||| |||||||| || ||||| || |||||||||||||| |||||||| |||||||||||||| ||||||| |||||| | ||| |
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| T |
5489421 |
agaaaggcaatttgaaggatccttgagatcttttttgattttaaggagtgccactctctcttccttaatgcaaagagtactaacattaaggctagtcact |
5489322 |
T |
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| Q |
117 |
acacactgagttgatgcaaaaagaaagaggagagcaataacataatatccaaa |
169 |
Q |
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| T |
5489321 |
aagtactgggttgatgcaaaaagaaagaagagggcaatgacaaaatatgcaaa |
5489269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 5484236 - 5484144
Alignment:
| Q |
17 |
agaaaggcaattggaaggatcgttcagatcnnnnnnnatgttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggct |
109 |
Q |
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| T |
5484236 |
agaaaggcaattggatggatctttgagatctattttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
5484144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 5495163 - 5495076
Alignment:
| Q |
57 |
ttaaggagtgccaccctctcttctttaatgcaaagagtgctaacatcaaggctcataactacacactgagttgatgcaaaaagaaaga |
144 |
Q |
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| T |
5495163 |
ttaaggagtgccactctctcttccttaatgcaaagagtgctaacattattgctactcactacatattgggttgatgcaaaaagaaaga |
5495076 |
T |
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