View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_86 (Length: 273)
Name: NF9444_low_86
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_86 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 785535 - 785783
Alignment:
| Q |
11 |
cataggtaaccactgttatttcaaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaatta |
110 |
Q |
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| T |
785535 |
cataggtaaccactgttatttcaaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaatta |
785634 |
T |
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| Q |
111 |
tcattttttgcttggttatgagatagaaactttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcccatctt |
210 |
Q |
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| T |
785635 |
tcattttttgcttggttatgagatagaaactttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcccatctt |
785734 |
T |
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| Q |
211 |
cttcttcttctccttcctctgaggtggttgtgcataacatcttcttatt |
259 |
Q |
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| T |
785735 |
cttcttcttctccttcctctgaggtggttgtgcataacatcttcttatt |
785783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 407252 - 407168
Alignment:
| Q |
142 |
ttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcccatcttcttcttcttctccttc |
226 |
Q |
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| T |
407252 |
ttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcctcccttcttcttcttcttcttc |
407168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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