View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_88 (Length: 270)
Name: NF9444_low_88
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 16087672 - 16087805
Alignment:
| Q |
17 |
agtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctcaaacacattttgctcaaaataatagtttaaaaaaccaaga |
116 |
Q |
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| T |
16087672 |
agtaagtaatccacatctaataaaatatttctatttgttaatttcacgttaacttgtctcaaacacattttgctcaaaataatagtt--aaaaaccaaga |
16087769 |
T |
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| Q |
117 |
tcacaatttgaacggtagaaattttaaaatcaacacaa |
154 |
Q |
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| T |
16087770 |
tcacaatttg-atggtagaaa-tttaaaatcaacacaa |
16087805 |
T |
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 38643158 - 38643343
Alignment:
| Q |
17 |
agtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctcaaacacattttgctcaaaataatagtttaaaaaaccaaga |
116 |
Q |
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|||||||| |||||||||||||||||||||| || |||| |||||| ||| |||| |||||| |||||||||||| ||||||||||| | | ||||| |
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| T |
38643158 |
agtaagtattccacatctaataaaatatttcaatctgtttatttcactataatttgtttcaaacgtattttgctcaaagtaatagtttaagagatcaaga |
38643257 |
T |
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| Q |
117 |
tcacaatttgaacggtagaaa----ttttaaaatcaacacaaaagtccatcttcattaataacaagctatcgtgatcataacaaca |
198 |
Q |
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|||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||| ||||||| || |||| |||| |
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| T |
38643258 |
gtgcaattttaatggtagaaaacagatttaaaatccatacaaaagtccatcttcattactaccaaactatcgtaataataataaca |
38643343 |
T |
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