View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9444_low_93 (Length: 258)
Name: NF9444_low_93
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 42004884 - 42005113
Alignment:
| Q |
17 |
atcaaacacttactaccattaacttttgatatacagagcaaacgaaaagttgatggaaaatgcataacacatcactggatcagagtttagaaaaatcaaa |
116 |
Q |
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| T |
42004884 |
atcaaacacttactaccattaacttttgatatacagagaaaacgaaaagttgatggaaaatgcataacacatcactggttcagagtttagaaaaatcaaa |
42004983 |
T |
|
| Q |
117 |
agcttaaaagtaggataaattaaggatgcatnnnnnnnnntaaagaaattaattaaagaaacaaaattggaacttttttattacgtgttgattgaaaatc |
216 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42004984 |
agcttaaaagtaagataaattaaggatgcat-aaaaaaaataaagaaattaattaaagaaacaaaattggaacttttttattacgtgttaattgaaaatc |
42005082 |
T |
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| Q |
217 |
ataaaagaccaatgttacataagaataatct |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42005083 |
ataaaagaccaatgttacataagaataatct |
42005113 |
T |
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