View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9444_low_94 (Length: 257)
Name: NF9444_low_94
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9444_low_94 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 14240383 - 14240636
Alignment:
| Q |
5 |
gagatggacatcagagatttgtattgagtgagttcaatttagaatcgattcaagatgtg-ctcgtgtgtatgtaagatcatgataactattttgtattat |
103 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14240383 |
gagatgcacataagagatttgtattgagtgagttcaatttagaatcgattcaagatgtgactcgtgtgtatgtaagatcatgataactattttgtattat |
14240482 |
T |
|
| Q |
104 |
gcacaaaagatagaatagccagattatatttcacataataataaacaaaacacagaaaatgggttaccttaaaaaggtgagatcctgtatgagcatccac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240483 |
gcacaaaagatagaatagccagattatatttcacataataataaacaaaacacagaaaatgggttaccttaaaaaggtgagatcctgtatgagcatccac |
14240582 |
T |
|
| Q |
204 |
agcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagcgcg |
257 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14240583 |
agcactaaaaggatcatcaaatagatagatatcagcatcttggtaaagagcgcg |
14240636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 14372960 - 14372722
Alignment:
| Q |
20 |
gatttgtattgagtgagttcaatttagaatcgattcaagatgtgc-tcgtgtgtatgtaagatcatgataactattttgtattatgcacaaaagatagaa |
118 |
Q |
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||||||||| || ||||||||||| || ||| |||||||| | | |||||||||||||||| | ||||||||||||| || |||||| || |||||| |
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| T |
14372960 |
gatttgtatcgattgagttcaattaagtatcaattcaagaagcgaatcgtgtgtatgtaagaacctgataactattttttagcgtgcacagaaaatagaa |
14372861 |
T |
|
| Q |
119 |
tagccagattatatttcacataataataaacaaaacacagaaaatgggttaccttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatc |
218 |
Q |
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| T |
14372860 |
tagccggattatattgcacataatcacaaacaaaacacataaaatgagttaccttaaaaaggtgagatcctgtatgagcatccacggcactaaaaggatc |
14372761 |
T |
|
| Q |
219 |
atcaaatagataaatatcagcatcttggtaaagagcgcg |
257 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
14372760 |
atcaaatagatatatatcagcatcttggtaaagagcgcg |
14372722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 254
Target Start/End: Original strand, 41438297 - 41438473
Alignment:
| Q |
75 |
gtaagatcatgataactattttgtattatgcacaaaagatagaatagccagattatatttcacataataataaacaaaacacagaaaatgggttacctta |
174 |
Q |
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|||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||| | ||||||||||||||| ||||||||| |
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| T |
41438297 |
gtaagatcctgataactattttgtagtatgcacaaaacatagaatagccggattatattgcacataataa---ataaaacacagaaaatgagttacctta |
41438393 |
T |
|
| Q |
175 |
aaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41438394 |
aaaaggtgagatcccgtatgagcatccacagcactaaaaggatcatcaaatagatagatatcagcatcttggtaaagagc |
41438473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 41451407 - 41451642
Alignment:
| Q |
17 |
agagatttgtattgagtgagttcaatttagaatcgattcaagatgtg-ctcgtgtgtatgtaagatcatgataactattttgtattatgcacaaaagata |
115 |
Q |
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||||| |||||| || |||||||||| || | |||||| |||||| ||| |||| |||||||||| |||||||||||||||| ||||| || || ||| |
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| T |
41451407 |
agagacttgtatcgattgagttcaatcaagtaacgattcgagatgtaactcttgtgcatgtaagatcctgataactattttgtactatgcgcagaaaata |
41451506 |
T |
|
| Q |
116 |
gaatagccagattatatttcacataataataaacaaaacacagaaaatgggttaccttaaaaaggtgagatcctgtatgagcatccacagcactaaaagg |
215 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41451507 |
gaatagccagattatattgcacataa---taaacaaaacacagaaaatgaattaccttaaaaaggtgagatcctgtatgagcatcaacagcactaaaagg |
41451603 |
T |
|
| Q |
216 |
atcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
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||| ||||||||||| ||||||||||||||||||||||| |
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| T |
41451604 |
atcgtcaaatagatagatatcagcatcttggtaaagagc |
41451642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 22750254 - 22750341
Alignment:
| Q |
158 |
gaaaatgggttaccttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttg |
245 |
Q |
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||||||| ||||||||||| || |||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
22750254 |
gaaaatgagttaccttaaatagatgagatcctgtatgagcatcaagagcactaaacggatcatcaaatagatatatatcagcatcttg |
22750341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 22740882 - 22740795
Alignment:
| Q |
167 |
ttaccttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
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|
|||||||||| || || ||||||||||||||||| || |||||||| |||||||| | ||||| ||||||||||||||||||||||| |
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| T |
22740882 |
ttaccttaaagagatgggatcctgtatgagcatcaactgcactaaagggatcatcgagcagatatatatcagcatcttggtaaagagc |
22740795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 22726945 - 22727031
Alignment:
| Q |
168 |
taccttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
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|
||||||||| || || ||||||||||||||||| || |||||||| ||||| || | ||||| ||||||||||||||||||||||| |
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|
| T |
22726945 |
taccttaaagagatgggatcctgtatgagcatcaactgcactaaagggatcgtcgagcagatatatatcagcatcttggtaaagagc |
22727031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 22740038 - 22739952
Alignment:
| Q |
168 |
taccttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
| |
|
||||||||| || || ||||||||||||||||| || |||||||| ||||| || | |||||||||||||||| |||||||||||| |
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|
| T |
22740038 |
taccttaaagagatgggatcctgtatgagcatcaactgcactaaagggatcgtcgagcagataaatatcagcattttggtaaagagc |
22739952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 2301348 - 2301267
Alignment:
| Q |
169 |
accttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaa |
250 |
Q |
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|||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| || || || ||||||||||| |||| |
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|
| T |
2301348 |
accttaaagaggtgagtgccagtatgagcatcgacagcactaaaaggatcatcaaaaaggtatatgtcagcatcttgataaa |
2301267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 2325567 - 2325486
Alignment:
| Q |
169 |
accttaaaaaggtgagatcctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaa |
250 |
Q |
| |
|
|||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| || || || ||||||||||| |||| |
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|
| T |
2325567 |
accttaaagaggtgagtgccggtatgagcatcgacagcactaaaaggatcatcaaaaaggtatatgtcagcatcttgataaa |
2325486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 5282655 - 5282709
Alignment:
| Q |
188 |
ctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatc |
242 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5282655 |
ctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatc |
5282709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 5290242 - 5290296
Alignment:
| Q |
188 |
ctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatc |
242 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
5290242 |
ctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagcatc |
5290296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 14949405 - 14949459
Alignment:
| Q |
188 |
ctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatc |
242 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
14949405 |
ctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatc |
14949459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 15125970 - 15125916
Alignment:
| Q |
188 |
ctgtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatc |
242 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
15125970 |
ctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatc |
15125916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 13553 - 13502
Alignment:
| Q |
190 |
gtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcat |
241 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| |||||||||| |
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|
| T |
13553 |
gtatgagcatcaacagcactaaatggatcatccaatagatatatatcagcat |
13502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 7947 - 8011
Alignment:
| Q |
190 |
gtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
7947 |
gtatgcgcatcaacagcactaaatggatcatctaatagatatatatcagcattctgataaagagc |
8011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 11663983 - 11663919
Alignment:
| Q |
190 |
gtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||| |||||||||| || |||||||| |
|
|
| T |
11663983 |
gtatgtgcatcaacagcactaaatggatcatccaagagatatatatcagcattctgataaagagc |
11663919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 11672961 - 11673025
Alignment:
| Q |
190 |
gtatgagcatccacagcactaaaaggatcatcaaatagataaatatcagcatcttggtaaagagc |
254 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||| | |||||||| ||| || ||||| |
|
|
| T |
11672961 |
gtatgcgcatcaacagcactaaatggatcatccaatagatataaatcagcattttgatagagagc |
11673025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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