View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9444_low_96 (Length: 255)

Name: NF9444_low_96
Description: NF9444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9444_low_96
NF9444_low_96
[»] chr5 (2 HSPs)
chr5 (1-245)||(32385998-32386243)
chr5 (1-245)||(14024445-14024690)
[»] chr7 (5 HSPs)
chr7 (1-245)||(8035221-8035466)
chr7 (1-245)||(46045417-46045662)
chr7 (1-245)||(38111026-38111271)
chr7 (1-245)||(45034030-45034275)
chr7 (52-245)||(19303934-19304126)
[»] chr8 (6 HSPs)
chr8 (1-245)||(41999794-42000039)
chr8 (1-245)||(45092951-45093196)
chr8 (3-245)||(9215733-9215976)
chr8 (1-70)||(14769770-14769840)
chr8 (146-220)||(40536864-40536939)
chr8 (94-138)||(14809165-14809209)
[»] chr4 (3 HSPs)
chr4 (1-245)||(1368944-1369189)
chr4 (1-245)||(28945720-28945965)
chr4 (1-212)||(36859160-36859372)
[»] chr2 (3 HSPs)
chr2 (1-245)||(11996087-11996332)
chr2 (1-245)||(42865427-42865672)
chr2 (1-245)||(24126767-24127012)
[»] chr1 (3 HSPs)
chr1 (1-245)||(6293526-6293771)
chr1 (1-78)||(28705668-28705746)
chr1 (164-233)||(34902738-34902807)
[»] chr3 (4 HSPs)
chr3 (101-220)||(1182049-1182167)
chr3 (3-82)||(1182161-1182241)
chr3 (146-220)||(32992856-32992930)
chr3 (164-225)||(54346357-54346418)
[»] chr6 (1 HSPs)
chr6 (147-215)||(26208155-26208223)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 32386243 - 32385998
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32386243 ccatcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 32386144  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  32386143 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 32386044  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  32386043 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 32385998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 14024690 - 14024445
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14024690 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 14024591  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  14024590 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 14024491  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  14024490 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 14024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8035466 - 8035221
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  8035466 ccatcacaattaagcttaacccaagcaattggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatacaccaacttcgtattgt 8035367  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  8035366 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 8035267  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8035266 ccaacatgttgtcatgaaagtagtctgccaagtagcagaattatct 8035221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 46045662 - 46045417
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46045662 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 46045563  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  46045562 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 46045463  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  46045462 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 46045417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38111026 - 38111271
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  38111026 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatataatttccttttgatgcgaacttttatgcaccaacttcgtattgt 38111125  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  38111126 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 38111225  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  38111226 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 38111271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 45034030 - 45034275
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  45034030 ccatcacaattaagcttaacccaaccaatcggaggtcgcatccaaccgatgtatataatttccttttgatgcgaatttttatgcaccaacttcgtattgt 45034129  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||    
T  45034130 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata 45034229  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||    
T  45034230 ccaacatgttatcatgaaagtagtctgccaagtagcaggattatct 45034275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 19303934 - 19304126
Alignment:
Q  52 atatagtttccttttgatgcggacttttatgcaccaacttcgtattgttttctatctctctagtaaacttttgaattaccagtgttggattgcttggtct 151  Q
    |||| |||||||||||||  ||  |||||||||| || ||  ||||||||||||| ||||  ||||||||||||||||| || ||||||||| | |||||    
T  19303934 atattgtttccttttgataaggtattttatgcac-aattttttattgttttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtct 19304032  T
Q  152 ttgaaatcctatttcaaaaatagatttgtttcgccaattccccagataccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    |||||||||||||||||||||||||||||| |||||||||| || ||| ||  | |||||| |||||| |||||||||||||| ||||||||||    
T  19304033 ttgaaatcctatttcaaaaatagatttgttccgccaattccacaaatatcagtacgttgtcgtgaaagaagtctgtcaagtagtagaattatct 19304126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42000039 - 41999794
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  42000039 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatccaccaacttcgtattgt 41999940  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  41999939 cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 41999840  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  41999839 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 41999794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 45093196 - 45092951
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45093196 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 45093097  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  45093096 cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 45092997  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  45092996 ccaacatgttgtcgtgaaattagtctgccaagtagcaggattatct 45092951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 9215976 - 9215733
Alignment:
Q  3 atcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgttt 101  Q
    ||||||||||| ||||||| |||||| | ||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| |  || | ||||| |    
T  9215976 atcacaattaatcttaacccaaccaaccagaggtcgcatccaactggtgtatatagtttccttttgatgaagacttttatgcactagttttgaattgtct 9215877  T
Q  102 tctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagatacc 201  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  9215876 tctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaatacc 9215777  T
Q  202 aacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    | |||| |||||||||||||||||  |||||||||| |||||||    
T  9215776 agcatgatgtcatgaaagtagtctcccaagtagcaggattatct 9215733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14769840 - 14769770
Alignment:
Q  1 ccatcacaattaagcttaac-caaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatg 70  Q
    |||||||||||||| ||||| |||||| |  |||||| ||||||||||||||||||||||| |||||||||    
T  14769840 ccatcacaattaagtttaactcaaccagttagaggtctcatccaaccgatgtatatagtttacttttgatg 14769770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 40536864 - 40536939
Alignment:
Q  146 tggtctttgaaatcctatttc-aaaaatagatttgtttcgccaattccccagataccaacatgttgtcatgaaagt 220  Q
    ||||||||||||||||| ||| ||||| || |||||||| |||| ||| ||||| ||| ||||| |||||||||||    
T  40536864 tggtctttgaaatcctacttcaaaaaacagttttgtttctccaagtccacagatgccagcatgtagtcatgaaagt 40536939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 14809209 - 14809165
Alignment:
Q  94 tattgttttctatctctctagtaaacttttgaattaccagtgttg 138  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||    
T  14809209 tattgtcttctatctctttagtaaacttttgaattatcagcgttg 14809165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 1369189 - 1368944
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1369189 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 1369090  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  1369089 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 1368990  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  1368989 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 1368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 28945720 - 28945965
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  28945720 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtactgt 28945819  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  28945820 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 28945919  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  28945920 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 28945965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 36859160 - 36859372
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    |||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||    
T  36859160 ccatcacaatcaagcttaacctaaccaatctgaggtcgcacccaaccgatgtatatattttccttttgatgcggacttttatgcaccagcttcatattgt 36859259  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||    
T  36859260 cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata 36859359  T
Q  200 ccaacatgttgtc 212  Q
     ||||||||||||    
T  36859360 tcaacatgttgtc 36859372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11996087 - 11996332
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  11996087 ccatcacaattaagcttaacccaaccaatcagaggtcgcatccaaccgatgtatatagtttccttttgatgcaaacttttatgcaccaacttcgtattgt 11996186  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||    
T  11996187 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata 11996286  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  11996287 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 11996332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 42865672 - 42865427
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42865672 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 42865573  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  42865572 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 42865473  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  42865472 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 42865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24126767 - 24127012
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24126767 ccatcgcaattaagcttaacccaacaaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 24126866  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||  | |||    
T  24126867 attctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaata 24126966  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  24126967 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 24127012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6293771 - 6293526
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatgcaccaacttcgtattgt 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6293771 ccatcacaattaagcttaacccaaccaaacggaggtcgcatccaaccgatgtatatagtttccttttgatgcgaacttttatgcaccaacttcgtattgt 6293672  T
Q  100 tttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagata 199  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||    
T  6293671 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata 6293572  T
Q  200 ccaacatgttgtcatgaaagtagtctgtcaagtagcagaattatct 245  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  6293571 ccaacatgttgtcatgaaagtagtctgccaagtagcaggattatct 6293526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28705746 - 28705668
Alignment:
Q  1 ccatcacaattaagcttaacc-aaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttt 78  Q
    |||||| |||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  28705746 ccatcaaaattaagcttaacccaaccaatctgaggtcacacccaaccgatgtatatagtttccttttgatgcggacttt 28705668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 34902807 - 34902738
Alignment:
Q  164 ttcaaaaatagatttgtttcgccaattccccagataccaacatgttgtcatgaaagtagtctgtcaagta 233  Q
    ||||||||||||||||||  ||||  ||| ||  |||||||||||  ||||||||||||| |||||||||    
T  34902807 ttcaaaaatagatttgttatgccatgtccacaagtaccaacatgtcatcatgaaagtagtatgtcaagta 34902738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 1182167 - 1182049
Alignment:
Q  101 ttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagatac 200  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||  | ||||    
T  1182167 ttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttc-aaaatagatttgtttcaccaattccataaatac 1182069  T
Q  201 caacatgttgtcatgaaagt 220  Q
     | |||||||||||||||||    
T  1182068 tagcatgttgtcatgaaagt 1182049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 1182241 - 1182161
Alignment:
Q  3 atcacaattaagcttaac-caaccaatcggaggtcgcatccaaccgatgtatatagtttccttttgatgcggacttttatg 82  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  1182241 atcacaattaagcttaacacaaccaatcagaggtcgcattcaaccgatgtatatagtttccttttgatgaggacttctatg 1182161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 32992930 - 32992856
Alignment:
Q  146 tggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagataccaacatgttgtcatgaaagt 220  Q
    ||||||||||||||||  ||||||||||| |||||||| |||| ||| || || ||||||||| |||||||||||    
T  32992930 tggtctttgaaatccttcttcaaaaatagctttgtttctccaagtccacatatgccaacatgtagtcatgaaagt 32992856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 54346418 - 54346357
Alignment:
Q  164 ttcaaaaatagatttgtttcgccaattccccagataccaacatgttgtcatgaaagtagtct 225  Q
    ||||||||||| ||| |||| ||| |||| ||  ||||||||||||||||||||||| ||||    
T  54346418 ttcaaaaatagttttatttctccacttccacaagtaccaacatgttgtcatgaaagttgtct 54346357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 26208223 - 26208155
Alignment:
Q  147 ggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccccagataccaacatgttgtcatg 215  Q
    |||||||| | ||||  ||||||||| ||||||||||||||| ||| || || |||||| |||||||||    
T  26208223 ggtctttggattccttcttcaaaaattgatttgtttcgccaagtccacaaatgccaacaggttgtcatg 26208155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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