View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_10 (Length: 467)
Name: NF9445_10
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_10 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 103 - 438
Target Start/End: Original strand, 32767738 - 32768073
Alignment:
| Q |
103 |
aattgatacaaacccgcaatgaaaaagaaaagttattgaattatttattgaaggagtagtatttatacaatctgctttcctgtttccataatgcacattt |
202 |
Q |
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| T |
32767738 |
aattgatacaaacccgcaatgaaaaagaaaagttattgaattctttattgaaggagtagtatttatacaatctgctttcctgtttccataatgcacattt |
32767837 |
T |
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| Q |
203 |
agtagtatcagttttgtcaagtagtggttaatgcatggtcaagacccttcttttgaagtaaccttgacccacttattattttggttatcattcaactttg |
302 |
Q |
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| T |
32767838 |
agtagtatcagttttgtcaagtagtggttaatgcatggtcaagacccttcttttgaagtaaccttgacccacttattattttggttatcattcaactttg |
32767937 |
T |
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| Q |
303 |
gagttaggatcataggataggatatcttatgtccttcttctctctttctattgaattgagtaaactcttgatgaagatgcaggaccacaccatgtttaac |
402 |
Q |
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| T |
32767938 |
gagttaggatcataggataggatatgttatgtccttcttctctctttctattgaattgagtaaactcttcatgaagatgcaggaccacaccatgtttaac |
32768037 |
T |
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| Q |
403 |
ctatattagtattcaatgcattttctttgtgcatgt |
438 |
Q |
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| T |
32768038 |
ctatattagtattcaatgcattttctttgtgcatgt |
32768073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 32767617 - 32767701
Alignment:
| Q |
22 |
catcatcattggaaaaatctgtagaacattnnnnnnntattattaacaatatattttttcatgaaaaaatgattaataataaatt |
106 |
Q |
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| T |
32767617 |
catcttcattgaaaaaatttgtagaacattaaaaaaatattattaacaatatattttttcatgaaaaaatgattaataataaatt |
32767701 |
T |
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