View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_11 (Length: 406)
Name: NF9445_11
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 26 - 406
Target Start/End: Complemental strand, 49872107 - 49871727
Alignment:
| Q |
26 |
agacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactctcgaaacaaatccacaactcaacactctacaaggaattggctaccaat |
125 |
Q |
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| T |
49872107 |
agacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactcgtgaaacaaatacacaactcaacactctacaaggaattggctaccaat |
49872008 |
T |
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| Q |
126 |
gacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattagataaatttgatctta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49872007 |
gacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatctta |
49871908 |
T |
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| Q |
226 |
acaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactaccca |
325 |
Q |
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| T |
49871907 |
acaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactaccca |
49871808 |
T |
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| Q |
326 |
tgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
406 |
Q |
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| T |
49871807 |
tgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
49871727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 26 - 406
Target Start/End: Complemental strand, 49866176 - 49865796
Alignment:
| Q |
26 |
agacatgaaggaattgatcaaacaagcattcaatgcaacagctgaagaactctcgaaacaaatccacaactcaacactctacaaggaattggctaccaat |
125 |
Q |
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|||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
49866176 |
agacatgaaggaattgatcaaagcagtattcaaagcaacagctgaagaactctcgaaacaaatccataactcaaaactctacaaggaattagctaccaat |
49866077 |
T |
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| Q |
126 |
gacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattagataaatttgatctta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
49866076 |
gacatgacaaagcaagctatggatatttgcaaagaagtccttggttatgcagttgatgatgttcatcaatctattcactcattggataaatttgatatta |
49865977 |
T |
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| Q |
226 |
acaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttagatggatttgagaacacaactaccca |
325 |
Q |
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| T |
49865976 |
gaaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaacaaacatgtttatatggatttgagaacacaactaccca |
49865877 |
T |
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| Q |
326 |
tgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttggatataatcaatggtctttc |
406 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
49865876 |
tgcagaacaaaccatggctaaggttcttaaggcttctttggagctaactaacaatgctttggatataatcaatggactttc |
49865796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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