View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_12 (Length: 335)
Name: NF9445_12
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_12 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 130 - 308
Target Start/End: Original strand, 6175579 - 6175753
Alignment:
| Q |
130 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgacacaaaacccgcacacaaatctttcctccataccatgtccatgt |
229 |
Q |
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| T |
6175579 |
gatattattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgt |
6175678 |
T |
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| Q |
230 |
ccatgtccttctcttcccattccatgccatggatttgtgaaagtatcatcaactaactagttatagttgttgcataatg |
308 |
Q |
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| T |
6175679 |
ccatgtccttctcttcccattccatgccatggatttgtgaaagtatcatc----aactagttatagttgttgcataatg |
6175753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6174911 - 6175020
Alignment:
| Q |
1 |
aatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaatatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6174911 |
aatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaatatattt |
6175010 |
T |
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| Q |
101 |
aataatttat |
110 |
Q |
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|||||||||| |
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| T |
6175011 |
aataatttat |
6175020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 23591208 - 23591239
Alignment:
| Q |
79 |
aattttgattttaaatatatttaataatttat |
110 |
Q |
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| T |
23591208 |
aattttgattttaaatatatttaataatttat |
23591239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 23591476 - 23591507
Alignment:
| Q |
79 |
aattttgattttaaatatatttaataatttat |
110 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23591476 |
aattttgattttaaatatatttaataatttat |
23591507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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