View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_13 (Length: 327)
Name: NF9445_13
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_13 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 14192634 - 14192354
Alignment:
| Q |
18 |
agcagcacagatcttttccctggtttcaaatattgggtcttcggcatctattgctggctgattaagtttactgagaaactgtaacagaaaacaaccatcc |
117 |
Q |
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| T |
14192634 |
agcagcacacatcttttccctggtttcaaatattgggtcttggggatctattgttgggtgttcaagtctactgagaagctgtaacagaaaacaaccatcc |
14192535 |
T |
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| Q |
118 |
aatatcattgttctcccgataacatctgcagttaattctgaacctaagatgctagcatcatagcttgcgcgggtgtctatttcaaatatgggaatatcta |
217 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14192534 |
aatatcatttttctcccgataacatctgtagttaattctgaacctaagatgctaccatcatagcttgcgcggatgtctatttcaaatatgggaatatctt |
14192435 |
T |
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| Q |
218 |
cgttacatgcccttaacattgtcatgaatagttctggttcatgctgctggttttcttgacgcagaaacctgtccatgtatt |
298 |
Q |
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|| ||||||| |||||| |||| |||| | ||||| ||| |||||||||||||||| |||||||||||| |||||||| |
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| T |
14192434 |
cgctacatgcacttaaccttgtgtcgaatgttcctggtacattctgctggttttcttgaagcagaaacctgttcatgtatt |
14192354 |
T |
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