View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_2 (Length: 656)
Name: NF9445_2
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 22 - 627
Target Start/End: Complemental strand, 31560812 - 31560201
Alignment:
| Q |
22 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttcagcaaggcaa |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31560812 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctcactgcctcagaaagcttttctctagaattttcagcaaggcaa |
31560713 |
T |
|
| Q |
122 |
gttattgtctatgtaaagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattacaataaattgaatg |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31560712 |
gttattgtctatgtaaagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattataataaattgaatg |
31560613 |
T |
|
| Q |
222 |
aatgtgtaatctgagtcattcaatctcaaatcaatggttgatatttaaaactgcgacgaactgcgtgatggagttttgtttgctctctcacacagaaaac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31560612 |
aatgtgtaatctgagtcattcaatctcaaatcaatggttgatatttaaaactgcaacgaactgcgtgatggagtcttgtttgctctctcacacagaaaac |
31560513 |
T |
|
| Q |
322 |
caccatacacatagtgaatgactgcaaaataaatcatgttagatgcgagtatgcgaccttataccagaactcacgtggttcaacaatttgttgtaaagaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31560512 |
caccatacacatagtgaatgactgcaaaataaatcatgttagatgcgagtatgcgaccttataccagaactcacgtggttcaacaatttgttgtaaagaa |
31560413 |
T |
|
| Q |
422 |
tttctgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttc-------aaaagcaatatagggattgttatg |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
31560412 |
tttctgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaactcaaaagcaatatagggattgttatg |
31560313 |
T |
|
| Q |
515 |
tagatagtgctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaa |
614 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31560312 |
tagatagtgctagt-aaaaaaatgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcatggaccaa |
31560214 |
T |
|
| Q |
615 |
cgcttaaaaactg |
627 |
Q |
| |
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||||||||||||| |
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| T |
31560213 |
cgcttaaaaactg |
31560201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 137 - 627
Target Start/End: Complemental strand, 31557870 - 31557365
Alignment:
| Q |
137 |
aagtatggaatcagaatagctgcggtaacttatctcgaatgtccgtctaaatcaacgattgagatcaattacaataaattgaatgaatgtgtaatctgag |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||| |||||||| |
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|
| T |
31557870 |
aagtatggaatcagaatagctgctgtaactgatctcgaatgtccgtctaaatcaatggttgagatcagttacaataaattaaatgaatgt--aatctgag |
31557773 |
T |
|
| Q |
237 |
tcattcaatctcaaatcaatggttgatatttaaaactgcgacgaactgcgtgatggagttttgtttgctctctcacacagaaaaccaccatacacatagt |
336 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||| |||| |||||| |
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| T |
31557772 |
tcattcaatctaaaatcaatggttgatatttaaaactgcgacgaactgcgtgattgagttttgtttgctatctcacacatataaccatcatatgcatagt |
31557673 |
T |
|
| Q |
337 |
gaatgactgcaaaataaatcatgttagatgcga--gtatgcg---------accttataccagaactcacgtggttcaacaatttgttgtaaagaatttc |
425 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||| | | ||||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
31557672 |
gaatgagtgcaaaataaatcatgttagatgtgaccttattagtaattgtacaagttataccagaaatcacttggttcaacaatttgttgtaaagaatttc |
31557573 |
T |
|
| Q |
426 |
tgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttct-------tcaaaagcaatatagggattgttatgtaga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |
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| T |
31557572 |
tgaaatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaaacattttcttcaaaactcaaaagcaacatagggattgttatgtaga |
31557473 |
T |
|
| Q |
519 |
tagtgctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaacgct |
618 |
Q |
| |
|
|| |||| | |||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||| ||||||||||| || |
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| T |
31557472 |
cagcgctact-aaaaaattgttaagttaagcttgaagatcaccaagaattctgatacaaatataagcaagttcttctttggatcaccgtggaccaacact |
31557374 |
T |
|
| Q |
619 |
taaaaactg |
627 |
Q |
| |
|
||||||||| |
|
|
| T |
31557373 |
taaaaactg |
31557365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 136 - 289
Target Start/End: Complemental strand, 9838108 - 9837947
Alignment:
| Q |
136 |
aaagtatggaatcagaatagctgcggtaa-----cttatctcgaatgtccg-tctaaatca--acgattgagatcaattacaataaattgaatgaatgtg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||| | | | ||||||| | |||||||||| |||||||||| |
|
|
| T |
9838108 |
aaagtatggaatcagaatagctgcggtaaggtaactgatctcgaatgcccgatctaaatcacaatggtcgagatcagtaacaataaattaaatgaatgtg |
9838009 |
T |
|
| Q |
228 |
taatctgagtcattcaatctcaaatcaatggttgatatttaaaactgcgacgaactgcgtga |
289 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
9838008 |
taatctgagcggttcaatctcaaatcaatggttgagatttaaaactgcgacgaactgcgtga |
9837947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 9838336 - 9838278
Alignment:
| Q |
22 |
catcatcattgagacagctctttataactggatgcaagtctgtaagacagtgagcctca |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9838336 |
catcatcattgagacagctctttataactggatgcaagtgtgtaagacagtgagcctca |
9838278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 380 - 495
Target Start/End: Original strand, 31876407 - 31876523
Alignment:
| Q |
380 |
ttataccagaactcacgtggttcaacaatttgttgtaaagaatttctga-aatgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaa |
478 |
Q |
| |
|
|||||| |||||||| || ||||||||||||| ||| |||||||||||| |||| ||| || |||||| |||||||||||||||||||||| | |||| |
|
|
| T |
31876407 |
ttatacaagaactcatgtagttcaacaatttgctgttaagaatttctgagaatggatgtaaattaacttccttaaacccttgcaagtaaatatcacctaa |
31876506 |
T |
|
| Q |
479 |
agcattttcttcaaaag |
495 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
31876507 |
agcactttcttcaaaag |
31876523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 31558060 - 31558017
Alignment:
| Q |
70 |
agtgagcctcactgcctcagaaagcttttctctagaattttcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31558060 |
agtgagcctcactgcctcagaaagcttttctctagaatattcag |
31558017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 9838156 - 9838124
Alignment:
| Q |
115 |
aaggcaagttattgtctatgtaaagtatggaat |
147 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
9838156 |
aaggcaagttactgtctatgtaaagtatggaat |
9838124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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