View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_4 (Length: 569)
Name: NF9445_4
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_4 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 20 - 558
Target Start/End: Original strand, 18049421 - 18049961
Alignment:
| Q |
20 |
agtattgggggtttgatcgatctggttttaagttttattgaaaaaattggacacgaaaatttcatggatgatgagagaaactannnnnnnnnnnnnnnnn |
119 |
Q |
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| T |
18049421 |
agtattgggggtttgatcgatctggttttaagttttattgaaaaaattggacatgaaaatttcatggatgatgagagaaactatttttgttttttgtttt |
18049520 |
T |
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| Q |
120 |
nnnnnaattgtagaaggttaaatgacgatcaatcaatctttaataattctcagagagaagagtaaaaataattaaggtattttgtaaaaaagaaatttga |
219 |
Q |
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| T |
18049521 |
tttttaattgtagaaggttaaatgacgatcaatctatctttaataattctcagagagaagagtaaaaataattaaggtattttgtaaaaaagaaatttga |
18049620 |
T |
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| Q |
220 |
ggaaggaatatatacaaccagatttaggataagttcactctcccattgcgggagatatgtattacttgcccaccctaaaaggcgcccttatatattgcta |
319 |
Q |
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| T |
18049621 |
ggaaggaatatatacaaccagatttaggataagttcactctcccattgcgggagacatgtattacttgcccaccctaaaaggcgcccttatatattgcta |
18049720 |
T |
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| Q |
320 |
cttgcaattagggattaagaaaagtactcgtgaataaaaactcaatttaattatttaattattccta--tttatgagtagtgggtctcacttagtaggaa |
417 |
Q |
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|||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18049721 |
cttgcaattagggattaagaaaagtacttgtgaacaaaatctcaatttaattatttaattattcctatttttatgagtagtgggtctcacttagtaggaa |
18049820 |
T |
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| Q |
418 |
tttcacccaacaaattaatttgtaaagtctgtgaccatctgtttggtcctttggtctaggatttggactggacgttcatggtatgcttatctgagctatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18049821 |
tttcacccaacaaattaatttgtaaagtctgtgaccatctgtttggtcctctggtctaggatttggactggacgttcatggtatgcttatctgagctatt |
18049920 |
T |
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| Q |
518 |
atcttgtggaatttagggtgtgcctgttgtatggtctctct |
558 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
18049921 |
atctagtggaatttagggtgtgcctgttgtatggtctctct |
18049961 |
T |
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