View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_5 (Length: 538)
Name: NF9445_5
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 44203972 - 44204088
Alignment:
| Q |
7 |
agttgtgtctcaatatgagcgaacgaaatattaagaaatctctaattaatgcattgattaataccaattaattaattattataaaactcacaaaatggac |
106 |
Q |
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| T |
44203972 |
agttgtgtctcaatatgggcgaacgaaatgttaagaaatctctaattaatgcattgattaataccaattaattaattattataaaactcacaaaatggac |
44204071 |
T |
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| Q |
107 |
tatatgtggctcttttc |
123 |
Q |
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| T |
44204072 |
tatatgtggctcttttc |
44204088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 28409460 - 28409536
Alignment:
| Q |
184 |
tggataaaagccaaggtgattgggttcaattatttgttaagtcaatggattttaaatccattggactgcctgtgatt |
260 |
Q |
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| T |
28409460 |
tggataaaagtcaaggtgattgagttcaattattcgtcaagtcaatggattttaaatccattggagtgcttgtgatt |
28409536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 26568305 - 26568365
Alignment:
| Q |
478 |
ttatataatgaaaggacttctttcattccaaatcacggagccgtgtgatgagcacatagcg |
538 |
Q |
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| T |
26568305 |
ttatataatgagaggacttctctcatttcaaaccatgcagctgtgtgatgagcacatagcg |
26568365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 538
Target Start/End: Complemental strand, 43014543 - 43014403
Alignment:
| Q |
396 |
gtaacatggtattatagtgtgtgtctatgttctgtctatagcccacatcgactagtttacaaataacattaagtagttaatgttatataatgaaaggact |
495 |
Q |
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| T |
43014543 |
gtaacttggtattatagcgtgcgt--atgttctgtctatagcccacatcgactagtttgtaaataaaagtgagttgctaacattataaaatgaaaggact |
43014446 |
T |
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| Q |
496 |
tctttcattccaaatcacggagccgtgtgatgagcacatagcg |
538 |
Q |
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| T |
43014445 |
tcatttgttacaaatcacggagccgtgtgatgagcacatagcg |
43014403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 435 - 538
Target Start/End: Original strand, 17889347 - 17889449
Alignment:
| Q |
435 |
agcccacatcgactagtttacaaataacattaagtagttaatgttatataatgaaaggacttctttcattccaaatcacggagccgtgtgatgagcacat |
534 |
Q |
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| T |
17889347 |
agcccacatcgactagtttacaaataacaataatt-gttgatgttataaaatcaaaggacttctttcattataagccacggagccgtgtgatgagcacat |
17889445 |
T |
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| Q |
535 |
agcg |
538 |
Q |
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| T |
17889446 |
agcg |
17889449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 538
Target Start/End: Complemental strand, 21884164 - 21884133
Alignment:
| Q |
507 |
aaatcacggagccgtgtgatgagcacatagcg |
538 |
Q |
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| T |
21884164 |
aaatcacggagccgtgtgatgagcacatagcg |
21884133 |
T |
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