View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_6 (Length: 538)
Name: NF9445_6
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_6 |
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Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 32 - 518
Target Start/End: Original strand, 14914003 - 14914489
Alignment:
| Q |
32 |
cttttcccccaccacctcccactgttcctcgaaatgttaaaccagtaattattgaacaagagcatgtaaagaagaagcttctaactaaagttccgatggc |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14914003 |
cttttcccccaccacctcccactgttcctcgaaatgttaaaccagtaattattgaacaagagcatgtaaagaagaagcttctatctaaagttccgatggc |
14914102 |
T |
|
| Q |
132 |
tagacgtggcctaggaacaatgggaaataaactttctttgttaacaaatcactttaaagtgaatgctgctaacaccgatgggtttttctttcagtacaat |
231 |
Q |
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| T |
14914103 |
tagacgtggcctaggaacaacgggaaataaactgtctttgttaacaaatcactttaaagtgaatgccgctaacaccgatgggtttttctttcagtacaat |
14914202 |
T |
|
| Q |
232 |
gtatgcatcgtatttcaaaattcagttgatttgttactaatatatgtgtataagttttcgctaagtgttggctcatgccatgaattggtgcaggttgcta |
331 |
Q |
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| T |
14914203 |
gtatgcatcgtatttcaaaattcagttgatttgttactaatatatgtgtataagttttcgctaagtgttggctcatgccatgaattggtgcaggttgcta |
14914302 |
T |
|
| Q |
332 |
tattttatgaagatggatgcctggttgaagcgagcggtgctggtaggaagatacttgataaagttnnnnnnncttatgattctgagcttagaggaaaaga |
431 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14914303 |
tattttatgaagatggatgcccggttgaagcgagcggtgctggtaggaagatacttgataaagttaaaaaaacttatgattctgagcttagaggaaaaga |
14914402 |
T |
|
| Q |
432 |
ctttgcttacgacggggagaagactctatttacaatgggctctctagctcagaacaagcttgagtttactgttgttcttgatgatgt |
518 |
Q |
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| T |
14914403 |
ctttgcttacgacggggagaagactctatttacaatgggctctctagctcagaacaagcttgagtttactgttgttcttgaagatgt |
14914489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 37 - 519
Target Start/End: Original strand, 38121638 - 38122114
Alignment:
| Q |
37 |
cccccaccacctcccactgttcctcgaaatgttaaaccagtaattattgaacaagagcatgtaaagaagaagcttctaactaaagttccgatggctagac |
136 |
Q |
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|||||||||||||||| |||||| | |||||||||||| ||| || ||||| |||||| ||||||||||||||| ||||| | ||| |||||||| | |
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| T |
38121638 |
cccccaccacctcccattgttccacccaatgttaaaccaataaagatagaacaggagcatttaaagaagaagcttcctactaaggctccaatggctaggc |
38121737 |
T |
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| Q |
137 |
gtggcctaggaacaatgggaaataaactttctttgttaacaaatcactttaaagtgaatgctgctaacaccgatgggtttttctttcagtacaatgtatg |
236 |
Q |
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| T |
38121738 |
gtggcctagggacgaagggagctaaactgcctttgttaacaaatcactttgaagtgaatgttgctaacacaaatagggttttctttcagtacagtgtatg |
38121837 |
T |
|
| Q |
237 |
catcgtatttcaaaattcagttgatttgttactaatatatgtgtataagttttcgctaagtgttggctcatgccatgaattggtgcaggttgctatattt |
336 |
Q |
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| T |
38121838 |
ttttgtattttatgattcagttgttttcttgcgaacatttgtgttaatttttttgtt---tgttggctcgtactatgtatttgtgcaggttgctttgttt |
38121934 |
T |
|
| Q |
337 |
tatgaagatggatgcctggttgaagcgagcggtgctggtaggaagatacttgataaagttnnnnnnncttatgattctgagcttagaggaaaagactttg |
436 |
Q |
| |
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| T |
38121935 |
tatgaagacggacgtcctgttgaagggaaaggcgccgggaggaagataattgacaaagttcaagaaacatatgattccgagcttaatggaaaagaccttg |
38122034 |
T |
|
| Q |
437 |
cttacgacggggagaagactctatttacaatgggctctctagctcagaacaagcttgagtttactgttgttcttgatgatgtc |
519 |
Q |
| |
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|||| ||||||| |||| || || ||||| ||||||||||||||||| ||||| ||||| | ||||||| |||| |||||| |
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| T |
38122035 |
cttatgacgggg---agaccctgttcacaatcggctctctagctcagaaaaagctcgagttcattgttgttgttgaagatgtc |
38122114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 323 - 518
Target Start/End: Original strand, 38113399 - 38113594
Alignment:
| Q |
323 |
aggttgctatattttatgaagatggatgcctggttgaagcgagcggtgctggtaggaagatacttgataaagttnnnnnnncttatgattctgagcttag |
422 |
Q |
| |
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|||||||| | ||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||| |||| |||||| ||| ||||||| |
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| T |
38113399 |
aggttgctcttttttatgaagatggacgccctgttgaaggaaagggtgctggtaggaagatacttgatagagttcaagaaacttatggttccgagcttaa |
38113498 |
T |
|
| Q |
423 |
aggaaaagactttgcttacgacggggagaagactctatttacaatgggctctctagctcagaacaagcttgagtttactgttgttcttgatgatgt |
518 |
Q |
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| T |
38113499 |
cgggaaagaccttgcttatgatggggagaagactctgtttactattggctcacttgctcagaacaagcttgaatttactgttgttcttgaagatgt |
38113594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 38113248 - 38113304
Alignment:
| Q |
178 |
aatcactttaaagtgaatgctgctaacaccgatgggtttttctttcagtacaatgta |
234 |
Q |
| |
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||||||||||||||||||| | | ||||| ||||| | |||||||||||||| |||| |
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| T |
38113248 |
aatcactttaaagtgaatgttaccaacactgatggttatttctttcagtacagtgta |
38113304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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