View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9445_low_2 (Length: 253)
Name: NF9445_low_2
Description: NF9445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9445_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 49871944 - 49871727
Alignment:
| Q |
18 |
catcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaac |
117 |
Q |
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| T |
49871944 |
catcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaac |
49871845 |
T |
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| Q |
118 |
aaacatgtttagatggatttgagaacacaactacccatgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871844 |
aaacatgtttagatggatttgagaacacaactacccatgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttgga |
49871745 |
T |
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| Q |
218 |
tataatcaatggtctttc |
235 |
Q |
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|||||||||||||||||| |
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| T |
49871744 |
tataatcaatggtctttc |
49871727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 49866013 - 49865796
Alignment:
| Q |
18 |
catcaatctattcactcattggataaatttgatcttaacaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49866013 |
catcaatctattcactcattggataaatttgatattagaaaaattgatgagattgcttatgatcttaaagtttggctctcaggtacacttgccaatcaac |
49865914 |
T |
|
| Q |
118 |
aaacatgtttagatggatttgagaacacaactacccatgcaggacaaaccatggctaaggttcttaacgcttctttggagctaagtaacaatgctttgga |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
49865913 |
aaacatgtttatatggatttgagaacacaactacccatgcagaacaaaccatggctaaggttcttaaggcttctttggagctaactaacaatgctttgga |
49865814 |
T |
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| Q |
218 |
tataatcaatggtctttc |
235 |
Q |
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|||||||||||| ||||| |
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| T |
49865813 |
tataatcaatggactttc |
49865796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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