View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9446_high_1 (Length: 513)
Name: NF9446_high_1
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 2368139 - 2367673
Alignment:
| Q |
18 |
tcttctagaactaccaggtcttatacttgtaaggctatctattaccctgaggtttctgtcaaggaggaaggtgaaccacaaacccttgattatagagtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2368139 |
tcttctagaactaccaggtcttatacttgtaaggctatctattaccctgaggtttctgtcaaggaggaaggtgaaccacaaacccttgattatagagtct |
2368040 |
T |
|
| Q |
118 |
tctttcatgacaaatctggtaaaaaggtacaatattttcatttgatcaatttgggtattggagttttggggagttttttgtaattgtgatgttgggtttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2368039 |
tctttcatgacaaatctggtaaaaaggtacaatattttcatttgatcaatttgggtattggagttttggggagttttttgtaattgtgatgttgggtttt |
2367940 |
T |
|
| Q |
218 |
gcttagaattaggaaattatgatattggatctttaaagtttattcctttttgtatcattgttatagaaagctgatgatgtcattgatttggggatttttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2367939 |
gcttagaattaggaaattatgatattgggtctttaaagtttattcctttttgtatcattgttatagaaagctgatgatgtcattgatttggggatttttg |
2367840 |
T |
|
| Q |
318 |
tttgatggaatgataatggtggtattaagtaaataaattgttgaatggtggatttgtttaattgcttagtaattgttgtgtttactttgatagatcaatt |
417 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2367839 |
tttgatggaatgatagtggtggtattaagtaaataaattgttgaatggtggatttgtttaattgcttagtagttgttgtgtttactttgatagatcaatt |
2367740 |
T |
|
| Q |
418 |
gattgttcagttgttaggtgatagtgttgtgttaagtgttaattgttaactaattttgatatatagc |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2367739 |
gattgttcagttgttaggtgatagtgttgtgttaagtgttaattgttaactaattttgatatatagc |
2367673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University