View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_high_12 (Length: 222)
Name: NF9446_high_12
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 34344020 - 34343981
Alignment:
| Q |
12 |
ataatactcaatagactttgcatattcgaagaaggaaaat |
51 |
Q |
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| T |
34344020 |
ataatactcaatagactttgcatattcgaagaaggaaaat |
34343981 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 34343836 - 34343799
Alignment:
| Q |
171 |
tgttgatcgatgaactaagtttgtttggaaagtctttg |
208 |
Q |
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| T |
34343836 |
tgttgatcgatgaactaagtttgtttggaaagtctttg |
34343799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 34343957 - 34343918
Alignment:
| Q |
51 |
tttagttgtagacattttgagaggaaaatacaagagtgcc |
90 |
Q |
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| T |
34343957 |
tttagttgtatacattttgagaggaaaatacaagagtgcc |
34343918 |
T |
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