View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_high_6 (Length: 267)
Name: NF9446_high_6
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 44568347 - 44568105
Alignment:
| Q |
17 |
aacaatacgagacctaaactgaggcggtacctcggacagttgaacaacattcatatactgaacatgatcaactaacgagagcactgtcactcagaagcca |
116 |
Q |
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| T |
44568347 |
aacaatacgagacctaaactgaggcggtacctcggacagttgaaaaacattcatatactgaacatgatcaactaacgagagcactgtcactcagaagcca |
44568248 |
T |
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| Q |
117 |
acccacttcacccatcggaaacaccgaccaactctcgccggaaacccatattcactaacaatgaaaggatcttctctggcatcattaggtttggaccaac |
216 |
Q |
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| T |
44568247 |
acccacttcacccatcggaaacaccgaccaactctcgccggcaacccatattcactaacaatgaaaggatcttctctggcatcattaggtttggaccaac |
44568148 |
T |
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| Q |
217 |
cgtatagctcacgttcttgtttactgcccggtacagtattatc |
259 |
Q |
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| T |
44568147 |
cgtatagctcacgttcttgtttactgcccggtacagtattatc |
44568105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 36027209 - 36027345
Alignment:
| Q |
15 |
tcaacaatacgagacctaaactgaggcggtacctcggacagttgaacaacattcatatactgaacatgatcaactaacgagagcactgtcactcagaagc |
114 |
Q |
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| T |
36027209 |
tcaacaaaacgagatctggactgatgtggtaccttggacagttga-cgacattcatataccaaaaatggtcagccaacgagactcctgtcattcacagac |
36027307 |
T |
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| Q |
115 |
caacccacttcacccatcggaaacaccgaccaactctc |
152 |
Q |
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| T |
36027308 |
caacccacttcacccatctgaaaatccgaccaactctc |
36027345 |
T |
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