View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_1 (Length: 677)
Name: NF9446_low_1
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 44375464 - 44374804
Alignment:
| Q |
1 |
acaagtctcccatacttttaacatatacaggttttataatgtgactatcaacattgggtacccaccaaggccatattttcttgatattgacactggtagc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375464 |
acaaatctcccatacttttaacatatacaggttttataatgtgactatcaacattgggtacccaccaaggccatattttcttgatattgacactggtagc |
44375365 |
T |
|
| Q |
101 |
gacctaacatggcttcaatgtgatgcaccttgttcccgttgctctcaggtatgaatctcactcactttactcattgccaacattcaataattaccaagca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375364 |
gacctaacatggcttcaatgtgatgcaccttgttcccgttgctctcaggtatgaatctcactcactttactcattgccaacattcaataattaccaagca |
44375265 |
T |
|
| Q |
201 |
aattaaaacctgtgaattgtaaagcctttttctttaaatgagattggattctagaccagataaatatatttatgcctgtagaatctgtttgattaaaatt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44375264 |
aattaaaacctgtgaattgtaaagcctttttctttaaatgagattggattctagaccagataaatatatttatgcatgtagaatctgtttgattaaaatt |
44375165 |
T |
|
| Q |
301 |
tcctatcaaaattaatcttcaataacttatgcctatttttcagacaccacatccactttaccggcctagcaatgacttggtcccctgcaggcatcccctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375164 |
tcctatcaaaattaatcttcaataacttatgcctatttttcagacaccacatccactttaccggcctagcaatgacttggtcccctgcaggcatcccctt |
44375065 |
T |
|
| Q |
401 |
tgtgcatcggtgcatcagacggataactatgaatgtgaagtcgagcatcaatgtgactatgaagttgagtatgcagatcattactcttctcttggtgtac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375064 |
tgtgcatcggtgcatcagacggataactatgaatgtgaagtcgagcatcaatgtgactatgaagttgagtatgcagatcattactcttctcttggtgtac |
44374965 |
T |
|
| Q |
501 |
ttgtcaatgatgtttatgttctcaactttacaaatggagtccagcttaaagttcgtatggcacttgggttagtaactctttctcaccctttgctagcttt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44374964 |
ttgtcaatgatgtttatgttctcaactttacaaatggagtccagcttaaagttcgtatggcacttgggttagtaactctttctcaccctttgctagcttt |
44374865 |
T |
|
| Q |
601 |
aaacatgctttaaaaactcataccactctcacttctttagtttttagtcgtagttggatag |
661 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44374864 |
aaacatgctttacaaactcataccactctcacttctttattttttagtcgtagttggatag |
44374804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 447 - 573
Target Start/End: Complemental strand, 39498093 - 39497967
Alignment:
| Q |
447 |
atcaatgtgactatgaagttgagtatgcagatcattactcttctcttggtgtacttgtcaatgatgtttatgttctcaactttacaaatggagtccagct |
546 |
Q |
| |
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||||||||||||| ||| || ||||||| ||||| ||||| | |||||||||||| | |||||||| || |||||||||| || ||||||||||| || |
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| T |
39498093 |
atcaatgtgactacgaaattaagtatgctgatcaatactcaacccttggtgtacttctaaatgatgtctaccttctcaacttcaccaatggagtccaact |
39497994 |
T |
|
| Q |
547 |
taaagttcgtatggcacttgggttagt |
573 |
Q |
| |
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||||||| | |||||||| |||||||| |
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| T |
39497993 |
taaagttagaatggcactggggttagt |
39497967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 39498485 - 39498376
Alignment:
| Q |
28 |
caggttttataatgtgactatcaacattgggtacccaccaaggccatattttcttgatattgacactggtagcgacctaacatggcttcaatgtgatgca |
127 |
Q |
| |
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|||||| |||||||| ||| ||||||| || | ||||||||||| |||||||||||| ||||||| ||||| || || |||||||| ||||||||||| |
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| T |
39498485 |
caggttctataatgttactctcaacataggccaaccaccaaggccctattttcttgatgttgacaccggtagtgaactcacatggctccaatgtgatgct |
39498386 |
T |
|
| Q |
128 |
ccttgttccc |
137 |
Q |
| |
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|||||||||| |
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|
| T |
39498385 |
ccttgttccc |
39498376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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