View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9446_low_17 (Length: 258)
Name: NF9446_low_17
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 31633525 - 31633758
Alignment:
| Q |
9 |
tggtgttcacctgatctacatgaatgtggaaaggatccatccttgcaaaagcaagtgaattccattgaacttgaatcataaccacagtgtccaccagaga |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
31633525 |
tggtgttcacctgagctacatgaatgtggaaaggatccatccttgcaaaagcaagtgaattcccttgaacttgactcataaccacagtgtccaccagaac |
31633624 |
T |
|
| Q |
109 |
tttgacactcatgacacaaactattatttgcattccactccaccccaaaaccattattaataatatacttcaaattttccacacttgaatttgttgcgac |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31633625 |
tttgacactcatggcacaaactattatttgcattccactccaccccaaaaccattatcaataacatccttcaaattttccacacttgaatttgttgcgac |
31633724 |
T |
|
| Q |
209 |
cctttcagcttctgactccaaaattggaataacc |
242 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
31633725 |
cctttcagcctctgactccaaaaatggaacaacc |
31633758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University