View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9446_low_22 (Length: 249)
Name: NF9446_low_22
Description: NF9446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9446_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38365695 - 38365460
Alignment:
| Q |
1 |
catgtgtagcctctcactattcaaaataaaagagaaatatatatctcctaannnnnnn-acgtgtctcgttcattttgaatggtaagtaattacacacat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38365695 |
catgtgtagcctctcactattcaaaataaaagagaaatatatatctcctaattttttttacgtgtctcgttcattttgaatggtaagtaattacacacat |
38365596 |
T |
|
| Q |
100 |
tagtattacctctcatgtttaaatcacatatgagaggatccatttcggttccaaacag----atgataaaacgttgacattttccgttgacattttctac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |
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| T |
38365595 |
tagtattacctctcatgtttaaatcacatatgagaggatccatttcggttccaaacagatgtatgataaaa-------------cattgacattttctac |
38365509 |
T |
|
| Q |
196 |
tccacaattctaggagggtctaactattttttccttgctctctgcttct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38365508 |
tccacaattctaggagggtctaactattttttccttgctctctccttct |
38365460 |
T |
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